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The map label for this gene is ydeL [H]

Identifier: 197116622

GI number: 197116622

Start: 262023

End: 263417

Strand: Reverse

Name: ydeL [H]

Synonym: Gbem_0222

Alternate gene names: 197116622

Gene position: 263417-262023 (Counterclockwise)

Preceding gene: 197116624

Following gene: 197116620

Centisome position: 5.71

GC content: 61.65

Gene sequence:

>1395_bases
ATGTTCATCCTGGACCATCACAGCAAGCTGCCGCTGTACACGCAACTCTATGATCAGATGAAAGCGGGCGTCCTCTCCGG
GAAGCTGCCATCTCACTCAAAGCTGCTCTCGGTCCGGGAGTTGGCCGCCGAGCTCTCCATCAGCCGAAACACCGTCGAAA
ACGCCTACCTTGAACTCTGTGCGGAAGGGTATATCTACAGCAAGCCGCGCAGCGGTTATTTCGTTTCCGCGCTGGCGCCG
GATGCCCTGCCTTTGCCGTCGCCCCGCATAAAGGAGCAGCGCGCCCACCTCCCCGAGCCTGAACCAAAGGGGAGCATCGA
CTTCCACCCCGCGCGGCTAGACCCGGACACCTTTCCCACATCGTTATGGCGCAGATGCTTCCTGGACTCATTGCGCCAGA
GTCGCAGCGCGCTGGCCCAGTACGGCGCCCCCCAGGGCGAGCTGAGGCTGCGCTCCAGTATCCGGCGTTACCTCGAGCGG
TCACGCGGAGTGGCCTGCGACCCTGAGCAAGTGGTGATCTGCTCCGGTCTCCAGCAGAGCCTCGACCTCGTTGCACAGAT
CTTGAAAGAGCGGCGGCCGGCGGTGGCGGTCGAAAACCCGGGCTTCCACCTTCCCAGGTCAATTTTCCGCAACCACGGCT
TCGAGACAGTTCCCATAGCTGTTGGCTCCGGAGGCCTCGACCTCGATGCCCTGGAATCGAGCGGCGCCACCCTTGTCTAC
GTCACACCCTCGCATCAGTTCCCAACCGGATGCGTGATGCCCATCGCCAACCGGCTCAGCCTGATCGAATGGGCGAATGC
GGGGGACCGGCTGGTGATCGAGGACGATTACGACAGCGAGCTTCGCTATCACGGCAAACCGATCCCCTCGCTGCAGGGGT
TGCACCCCGACGGGAACATCGTCTATCTCGGAACCTTTTCCAAGGTACTGTCGCCGGCTTTGCGCGTCAGTTACCTGGTG
CTGCCTTACGCGCTGCTATCCGCCTATCGGCGGCTTTTCCGCGACTATGCCTGCACCGTCTCCCTTTTGGAGCAGGCGAC
CCTTGCCAGGTTCATGGAGCAGGGGGACTGGGATCGGCACCTGCGGCGGATGCGCACTCTCTACCAAAAGAAGCACGATG
CCATGCTGCGGGCGGTCGAGACCCATTTCGGCCCCAAAGCCCTTGTACTCGGACAGGGTGCGGGACTGCACATGGTGCTG
GAACTCTCCCAGCACGACCTGAGCGAAAAAGAGCTCATCTCACGAGCCAGGAGCAAGGGGATCGAGCTATTTCCCTATTC
CGCCACCTGTGCCGAAGAAGTGGGCAGTTGCAGCAGGGTCGTCTTGGGCTTTGGCGGCGTAAAACCGGACGTCATAGATC
GGGGCGTCGAACTTTTGTCCCGGGCATGGTACTGA

Upstream 100 bases:

>100_bases
CGCCCCGACGAGGGGTGCAGATTGCGTTTGACGCAAATATGGCCGCTGCATTACACTGCCGTGGTTGCCGGAAACCCTCT
GCCTATGGATCTGGAGCCTT

Downstream 100 bases:

>100_bases
TGCAGGATACGGAGAAACTGTACTGAAATAAAGGTGCAGTTTCGAAGATAATCATGGGGTCAGATGGGGCAAGAGGGGGG
GCTCTCAACACGGGAAAGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MFILDHHSKLPLYTQLYDQMKAGVLSGKLPSHSKLLSVRELAAELSISRNTVENAYLELCAEGYIYSKPRSGYFVSALAP
DALPLPSPRIKEQRAHLPEPEPKGSIDFHPARLDPDTFPTSLWRRCFLDSLRQSRSALAQYGAPQGELRLRSSIRRYLER
SRGVACDPEQVVICSGLQQSLDLVAQILKERRPAVAVENPGFHLPRSIFRNHGFETVPIAVGSGGLDLDALESSGATLVY
VTPSHQFPTGCVMPIANRLSLIEWANAGDRLVIEDDYDSELRYHGKPIPSLQGLHPDGNIVYLGTFSKVLSPALRVSYLV
LPYALLSAYRRLFRDYACTVSLLEQATLARFMEQGDWDRHLRRMRTLYQKKHDAMLRAVETHFGPKALVLGQGAGLHMVL
ELSQHDLSEKELISRARSKGIELFPYSATCAEEVGSCSRVVLGFGGVKPDVIDRGVELLSRAWY

Sequences:

>Translated_464_residues
MFILDHHSKLPLYTQLYDQMKAGVLSGKLPSHSKLLSVRELAAELSISRNTVENAYLELCAEGYIYSKPRSGYFVSALAP
DALPLPSPRIKEQRAHLPEPEPKGSIDFHPARLDPDTFPTSLWRRCFLDSLRQSRSALAQYGAPQGELRLRSSIRRYLER
SRGVACDPEQVVICSGLQQSLDLVAQILKERRPAVAVENPGFHLPRSIFRNHGFETVPIAVGSGGLDLDALESSGATLVY
VTPSHQFPTGCVMPIANRLSLIEWANAGDRLVIEDDYDSELRYHGKPIPSLQGLHPDGNIVYLGTFSKVLSPALRVSYLV
LPYALLSAYRRLFRDYACTVSLLEQATLARFMEQGDWDRHLRRMRTLYQKKHDAMLRAVETHFGPKALVLGQGAGLHMVL
ELSQHDLSEKELISRARSKGIELFPYSATCAEEVGSCSRVVLGFGGVKPDVIDRGVELLSRAWY
>Mature_464_residues
MFILDHHSKLPLYTQLYDQMKAGVLSGKLPSHSKLLSVRELAAELSISRNTVENAYLELCAEGYIYSKPRSGYFVSALAP
DALPLPSPRIKEQRAHLPEPEPKGSIDFHPARLDPDTFPTSLWRRCFLDSLRQSRSALAQYGAPQGELRLRSSIRRYLER
SRGVACDPEQVVICSGLQQSLDLVAQILKERRPAVAVENPGFHLPRSIFRNHGFETVPIAVGSGGLDLDALESSGATLVY
VTPSHQFPTGCVMPIANRLSLIEWANAGDRLVIEDDYDSELRYHGKPIPSLQGLHPDGNIVYLGTFSKVLSPALRVSYLV
LPYALLSAYRRLFRDYACTVSLLEQATLARFMEQGDWDRHLRRMRTLYQKKHDAMLRAVETHFGPKALVLGQGAGLHMVL
ELSQHDLSEKELISRARSKGIELFPYSATCAEEVGSCSRVVLGFGGVKPDVIDRGVELLSRAWY

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787710, Length=410, Percent_Identity=26.8292682926829, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1790797, Length=392, Percent_Identity=25.765306122449, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51792; Mature: 51792

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFILDHHSKLPLYTQLYDQMKAGVLSGKLPSHSKLLSVRELAAELSISRNTVENAYLELC
CEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEGYIYSKPRSGYFVSALAPDALPLPSPRIKEQRAHLPEPEPKGSIDFHPARLDPDTFPT
HCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
SLWRRCFLDSLRQSRSALAQYGAPQGELRLRSSIRRYLERSRGVACDPEQVVICSGLQQS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LDLVAQILKERRPAVAVENPGFHLPRSIFRNHGFETVPIAVGSGGLDLDALESSGATLVY
HHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCEEEE
VTPSHQFPTGCVMPIANRLSLIEWANAGDRLVIEDDYDSELRYHGKPIPSLQGLHPDGNI
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCE
VYLGTFSKVLSPALRVSYLVLPYALLSAYRRLFRDYACTVSLLEQATLARFMEQGDWDRH
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LRRMRTLYQKKHDAMLRAVETHFGPKALVLGQGAGLHMVLELSQHDLSEKELISRARSKG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHCCCCHHHHHHHHHHCC
IELFPYSATCAEEVGSCSRVVLGFGGVKPDVIDRGVELLSRAWY
CEEECCCCHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFILDHHSKLPLYTQLYDQMKAGVLSGKLPSHSKLLSVRELAAELSISRNTVENAYLELC
CEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEGYIYSKPRSGYFVSALAPDALPLPSPRIKEQRAHLPEPEPKGSIDFHPARLDPDTFPT
HCCCEECCCCCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
SLWRRCFLDSLRQSRSALAQYGAPQGELRLRSSIRRYLERSRGVACDPEQVVICSGLQQS
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
LDLVAQILKERRPAVAVENPGFHLPRSIFRNHGFETVPIAVGSGGLDLDALESSGATLVY
HHHHHHHHHHCCCEEEECCCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCEEEE
VTPSHQFPTGCVMPIANRLSLIEWANAGDRLVIEDDYDSELRYHGKPIPSLQGLHPDGNI
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCCCE
VYLGTFSKVLSPALRVSYLVLPYALLSAYRRLFRDYACTVSLLEQATLARFMEQGDWDRH
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LRRMRTLYQKKHDAMLRAVETHFGPKALVLGQGAGLHMVLELSQHDLSEKELISRARSKG
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHCCCCHHHHHHHHHHCC
IELFPYSATCAEEVGSCSRVVLGFGGVKPDVIDRGVELLSRAWY
CEEECCCCHHHHHHCCHHEEEEECCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]