| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is dnaJ [H]
Identifier: 197116617
GI number: 197116617
Start: 257560
End: 258453
Strand: Reverse
Name: dnaJ [H]
Synonym: Gbem_0217
Alternate gene names: 197116617
Gene position: 258453-257560 (Counterclockwise)
Preceding gene: 197116620
Following gene: 197116613
Centisome position: 5.6
GC content: 62.64
Gene sequence:
>894_bases ATGGCACAAAGAGATTATTACGAGGTCCTTGGCGTAAAGAAAGGGGCCTCTGTCGACGAGATAAAGCGGGCCTACCGCAA ACTCGCCGTGAAATACCACCCAGACAAGAACCCGGGAGACAAACAGGCCGAGGAGCGCTTCAAGGAGATAAACGAGGCGT ACGCGGTCCTGTCGGATCCCAAGAAGAAGGAGCAATTCGACCAGTTCGGTTCCACCAACTTCCATCAGAAATTCTCCCAG GAGGACATCTTCAGGGGGTTCAACGTCGACGACATGTTCCGCGACCAGGGGTTCGGCACCGACGACATCTTTTCCCGTAT CTTCGGCGACGCCCTAAGGCGCCAGCGCGGCGGCGGGCACGGGCGGATGGCGGTAAGGGGCGAGGACTTCTCCATGGAGA TCCAGGTTACCTTCCGCGAGGCGTACGACGGGGCCGAGAAGCGTGTCGCCTTCATGCGCGACGGCGCCCGCGAGGAACTG TCGGTGAAGATCCCGGCGGGGATCGAGAGCGGTGCGAAGCTCCGGGTCGCCGGGCGGGGAGGCGCGGGGCGCATGGGAGG GAACTCCGGGGACCTCTATCTCACCGTGACTGTGGGGGCGGATCCGCTCTTTACCCGCGAGGGGGCCGACCTGGTGCTGA ACCACGAGGTGAAATTCTCCCAGGCGGTGCTCGGTGGATACATCGAGGTCCCCACCATGTCCGGCGCCAAGCGGATCAAG ATACCGGCCAGCATCCAGGCGGGTACCAAGGTGAGGCTCAAGGGGCTCGGGTTCCCTCTGGTCGGGGAGCAGGCACGCGG CGACATGTACGTGAGGATCGCGGTTCATGTCCCGGAAAAACTGAGCCACCGCCAGCGTGAGCTGGTGGAGCAACTGGCGG CAGAAGGGTTGTAA
Upstream 100 bases:
>100_bases CTGCCGCAGCTTGTCAAGGTTTACAACATGTTGACAACCTTTGTTCCAGCTATTACATTCTGGACAGCTTATCCCACAGC AATAAGAAAGGACGTCACCC
Downstream 100 bases:
>100_bases CTTCAGGAGCGAAAGCAAAAAGCCCCTCCGGGGATTCCGGGAGGGGCTTTTTTTGTGGTTGATCAGTGGGTTGCGGGAGA GGAGCTAGCGGAGTTCTATG
Product: DnaJ-like molecular chaperone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MAQRDYYEVLGVKKGASVDEIKRAYRKLAVKYHPDKNPGDKQAEERFKEINEAYAVLSDPKKKEQFDQFGSTNFHQKFSQ EDIFRGFNVDDMFRDQGFGTDDIFSRIFGDALRRQRGGGHGRMAVRGEDFSMEIQVTFREAYDGAEKRVAFMRDGAREEL SVKIPAGIESGAKLRVAGRGGAGRMGGNSGDLYLTVTVGADPLFTREGADLVLNHEVKFSQAVLGGYIEVPTMSGAKRIK IPASIQAGTKVRLKGLGFPLVGEQARGDMYVRIAVHVPEKLSHRQRELVEQLAAEGL
Sequences:
>Translated_297_residues MAQRDYYEVLGVKKGASVDEIKRAYRKLAVKYHPDKNPGDKQAEERFKEINEAYAVLSDPKKKEQFDQFGSTNFHQKFSQ EDIFRGFNVDDMFRDQGFGTDDIFSRIFGDALRRQRGGGHGRMAVRGEDFSMEIQVTFREAYDGAEKRVAFMRDGAREEL SVKIPAGIESGAKLRVAGRGGAGRMGGNSGDLYLTVTVGADPLFTREGADLVLNHEVKFSQAVLGGYIEVPTMSGAKRIK IPASIQAGTKVRLKGLGFPLVGEQARGDMYVRIAVHVPEKLSHRQRELVEQLAAEGL >Mature_296_residues AQRDYYEVLGVKKGASVDEIKRAYRKLAVKYHPDKNPGDKQAEERFKEINEAYAVLSDPKKKEQFDQFGSTNFHQKFSQE DIFRGFNVDDMFRDQGFGTDDIFSRIFGDALRRQRGGGHGRMAVRGEDFSMEIQVTFREAYDGAEKRVAFMRDGAREELS VKIPAGIESGAKLRVAGRGGAGRMGGNSGDLYLTVTVGADPLFTREGADLVLNHEVKFSQAVLGGYIEVPTMSGAKRIKI PASIQAGTKVRLKGLGFPLVGEQARGDMYVRIAVHVPEKLSHRQRELVEQLAAEGL
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI201862587, Length=345, Percent_Identity=31.8840579710145, Blast_Score=134, Evalue=7e-32, Organism=Homo sapiens, GI201862518, Length=345, Percent_Identity=31.8840579710145, Blast_Score=134, Evalue=7e-32, Organism=Homo sapiens, GI6631085, Length=339, Percent_Identity=31.858407079646, Blast_Score=134, Evalue=8e-32, Organism=Homo sapiens, GI56549115, Length=345, Percent_Identity=31.5942028985507, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI205360840, Length=351, Percent_Identity=29.3447293447293, Blast_Score=132, Evalue=3e-31, Organism=Homo sapiens, GI205360838, Length=351, Percent_Identity=29.3447293447293, Blast_Score=132, Evalue=3e-31, Organism=Homo sapiens, GI5453690, Length=346, Percent_Identity=28.9017341040462, Blast_Score=125, Evalue=5e-29, Organism=Homo sapiens, GI7706495, Length=331, Percent_Identity=28.3987915407855, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI194328758, Length=151, Percent_Identity=40.3973509933775, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI194328760, Length=151, Percent_Identity=40.3973509933775, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI39204547, Length=316, Percent_Identity=25.3164556962025, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI23503241, Length=118, Percent_Identity=47.4576271186441, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI4504511, Length=149, Percent_Identity=36.9127516778523, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI194306642, Length=111, Percent_Identity=46.8468468468468, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI194306640, Length=111, Percent_Identity=46.8468468468468, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI17388799, Length=112, Percent_Identity=49.1071428571429, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI29126218, Length=106, Percent_Identity=44.3396226415094, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI4885495, Length=112, Percent_Identity=49.1071428571429, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI45504382, Length=89, Percent_Identity=43.8202247191011, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI47777312, Length=128, Percent_Identity=44.53125, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI9558755, Length=105, Percent_Identity=44.7619047619048, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI27151736, Length=126, Percent_Identity=39.6825396825397, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI72534740, Length=150, Percent_Identity=40, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI88501736, Length=126, Percent_Identity=39.6825396825397, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI21553335, Length=68, Percent_Identity=54.4117647058823, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI5031741, Length=70, Percent_Identity=54.2857142857143, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI27735107, Length=81, Percent_Identity=50.6172839506173, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI22749377, Length=69, Percent_Identity=55.0724637681159, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI24308127, Length=67, Percent_Identity=47.7611940298507, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI68077168, Length=63, Percent_Identity=53.968253968254, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI68077166, Length=63, Percent_Identity=53.968253968254, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI56687498, Length=66, Percent_Identity=50, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI217035105, Length=69, Percent_Identity=47.8260869565217, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI221219056, Length=70, Percent_Identity=52.8571428571429, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI262206280, Length=70, Percent_Identity=52.8571428571429, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1787235, Length=307, Percent_Identity=35.1791530944625, Blast_Score=175, Evalue=3e-45, Organism=Escherichia coli, GI1786197, Length=362, Percent_Identity=31.4917127071823, Blast_Score=134, Evalue=8e-33, Organism=Caenorhabditis elegans, GI17534355, Length=333, Percent_Identity=31.2312312312312, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI17554644, Length=92, Percent_Identity=51.0869565217391, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17568643, Length=67, Percent_Identity=59.7014925373134, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17507263, Length=89, Percent_Identity=49.438202247191, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI212645553, Length=67, Percent_Identity=49.2537313432836, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538236, Length=119, Percent_Identity=39.4957983193277, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17553096, Length=138, Percent_Identity=31.8840579710145, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17553098, Length=138, Percent_Identity=31.8840579710145, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115532476, Length=69, Percent_Identity=53.6231884057971, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115532378, Length=98, Percent_Identity=37.7551020408163, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI86563276, Length=113, Percent_Identity=38.0530973451327, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554874, Length=86, Percent_Identity=41.8604651162791, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6324265, Length=148, Percent_Identity=37.1621621621622, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6323870, Length=142, Percent_Identity=38.0281690140845, Blast_Score=85, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6320888, Length=108, Percent_Identity=37.962962962963, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6322194, Length=66, Percent_Identity=51.5151515151515, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6323119, Length=70, Percent_Identity=54.2857142857143, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=53.125, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324252, Length=67, Percent_Identity=44.7761194029851, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6324103, Length=108, Percent_Identity=38.8888888888889, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322388, Length=102, Percent_Identity=41.1764705882353, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6323813, Length=123, Percent_Identity=36.5853658536585, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI24658562, Length=334, Percent_Identity=32.6347305389222, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI24658555, Length=334, Percent_Identity=32.6347305389222, Blast_Score=145, Evalue=3e-35, Organism=Drosophila melanogaster, GI85726398, Length=349, Percent_Identity=32.6647564469914, Blast_Score=144, Evalue=1e-34, Organism=Drosophila melanogaster, GI45552811, Length=370, Percent_Identity=27.027027027027, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI18858081, Length=352, Percent_Identity=26.9886363636364, Blast_Score=101, Evalue=7e-22, Organism=Drosophila melanogaster, GI19920464, Length=330, Percent_Identity=24.8484848484848, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI17737735, Length=85, Percent_Identity=45.8823529411765, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI28574723, Length=85, Percent_Identity=45.8823529411765, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24668523, Length=85, Percent_Identity=45.8823529411765, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24654066, Length=67, Percent_Identity=53.7313432835821, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654070, Length=67, Percent_Identity=53.7313432835821, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654068, Length=67, Percent_Identity=53.7313432835821, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654072, Length=67, Percent_Identity=53.7313432835821, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646562, Length=65, Percent_Identity=56.9230769230769, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646560, Length=65, Percent_Identity=56.9230769230769, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646558, Length=65, Percent_Identity=56.9230769230769, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24646556, Length=65, Percent_Identity=56.9230769230769, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357547, Length=65, Percent_Identity=56.9230769230769, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=53.125, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI45549272, Length=69, Percent_Identity=50.7246376811594, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI45552813, Length=69, Percent_Identity=50.7246376811594, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI20129487, Length=280, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584014, Length=280, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24668492, Length=67, Percent_Identity=47.7611940298507, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584630, Length=70, Percent_Identity=48.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17648033, Length=92, Percent_Identity=41.304347826087, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24762799, Length=123, Percent_Identity=36.5853658536585, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI21358273, Length=69, Percent_Identity=52.1739130434783, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355911, Length=66, Percent_Identity=53.030303030303, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24651439, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24651436, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358311, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24641698, Length=65, Percent_Identity=44.6153846153846, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641696, Length=65, Percent_Identity=44.6153846153846, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 32996; Mature: 32865
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQRDYYEVLGVKKGASVDEIKRAYRKLAVKYHPDKNPGDKQAEERFKEINEAYAVLSDP CCCCHHHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC KKKEQFDQFGSTNFHQKFSQEDIFRGFNVDDMFRDQGFGTDDIFSRIFGDALRRQRGGGH HHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GRMAVRGEDFSMEIQVTFREAYDGAEKRVAFMRDGAREELSVKIPAGIESGAKLRVAGRG CEEEEECCCEEEEEEEEEEHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECC GAGRMGGNSGDLYLTVTVGADPLFTREGADLVLNHEVKFSQAVLGGYIEVPTMSGAKRIK CCCCCCCCCCCEEEEEEECCCCEEECCCCCEEEECCCHHHHHHHCCEEECCCCCCCEEEE IPASIQAGTKVRLKGLGFPLVGEQARGDMYVRIAVHVPEKLSHRQRELVEQLAAEGL CCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AQRDYYEVLGVKKGASVDEIKRAYRKLAVKYHPDKNPGDKQAEERFKEINEAYAVLSDP CCCHHHHHHCCCCCCCHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC KKKEQFDQFGSTNFHQKFSQEDIFRGFNVDDMFRDQGFGTDDIFSRIFGDALRRQRGGGH HHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GRMAVRGEDFSMEIQVTFREAYDGAEKRVAFMRDGAREELSVKIPAGIESGAKLRVAGRG CEEEEECCCEEEEEEEEEEHHHCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECC GAGRMGGNSGDLYLTVTVGADPLFTREGADLVLNHEVKFSQAVLGGYIEVPTMSGAKRIK CCCCCCCCCCCEEEEEEECCCCEEECCCCCEEEECCCHHHHHHHCCEEECCCCCCCEEEE IPASIQAGTKVRLKGLGFPLVGEQARGDMYVRIAVHVPEKLSHRQRELVEQLAAEGL CCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA