| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116591
Identifier: 197116591
GI number: 197116591
Start: 225103
End: 226815
Strand: Direct
Name: 197116591
Synonym: Gbem_0191
Alternate gene names: NA
Gene position: 225103-226815 (Clockwise)
Preceding gene: 197116590
Following gene: 197116592
Centisome position: 4.88
GC content: 63.98
Gene sequence:
>1713_bases ATGTCATTTGACGGTGATTTAGAGCACCTGCCCATAGTCGACGTGATCCAGTTGCTGCACGCGACCGGCAAGTCCGGCAC CTTGACCTTGAAAAGCGCCAAGGGTGAGAGCCAGCTGGCCTTTGTGGACGGGTTCGTGGTCAGCGCGAATCACGTGAACA ACAGCGTCAGGATCGGCCAGATCATGCTCGACATGGGGCTGATCACCAAAGAGAACCTCGATCTGGCGCTTAAGGAGCAG AGATCCGCCGGCTCGCAGCGCAAGCCGATCATCCAGACCCTGATCGAGGGGGGGGTGGTCAAGACTTCGGATGCCTACAA GGGACTCGAAGCGCTGATCGAAATGACCATCGTCGAGGTCCTCACCTGGACCAGGGGGACCTTCTCCCTCGACGTCAACG AGTCCGTCGTTTCCGACGACTACCGCTACTTCCCCGAACAGGTCAAGCAGGAGATCCACCTCAACACGCAGAACCTGTTG ATGGACGCCCTGCGCATCTACGATGAGCGTAAGCGCGACGGCACCCTCACCCCCGAGGCCATGTTCGGTACCGCAGAGCC ACCGATGCCGGAAGCGCCTGCCGGCGCCGCTGAGATATCCGCCGTCGACCTGGGGCTGGAGGAACTGGACGAGCTGGAAA GGCGCATCCCCCAGCACTTCGCCCCCCTGGCTGAGGAGCTCCCCGACACCCCGTCCAACAGGCTCCGGGACGAGCTGACG GGAATCCCCGTGGAGGAACAGCAGCTGCTTTTCCGCTACCTGGAGCAGCTGCCGCAGCCTCAGGAGGGGGCCTTCGCCGG AACCGGGGTGGTGCTCTACACCACCGACAAGGTGCTGCGCGAATGCGTGGCCGCCGTCTGCGGCGCAAGCTTTCTCTGCG CGACCGACGATCCTTCCCATATCGATGCGGTCCTCGACCAGGCCCTCTCCAGGCAGCGCCTTCCCTTGCTGTTGGTGGAT GCCGGCGAGCCGGGTGACGGAGCTGCTCTGCTCGCGTTTGCGCAGCAAAGACGGGAACGTCATCCCGATCTCCCCATCGT CCTTCTCGCCTCCCCCGGCGACTACGCGCTCTTCGCACGCGCATTCGACGTCGGAGCCAGCGCGTTTTTGCCCCGCGCCA CCAGAAAGGAGCGTGCCGGGAGCTTCATCGCCGATGCTATAGAGAGCTGTCGAGCCCTGGCCGGCTACCTGGAAAAGCGC AGCGAGGAGCCCGGGCTCGCGCTGTTGCCCAGGTTCAGAAGCAGCTTTCTGGCCCTTTCCGAGCAGCGCGACCCGCCGGA GGTCACCTTTGCGCTGCTGCAGGCGGCCTGCGGCTTTTTCAAGCGCGGGGTCACCCTGGTGGTGGTGCGCTCCGAGCTGA TCGCCGAACGCGCCATCGGAGCGAGCGACACGGGCGCCGTCACCTCGGTGAAGCTGCGCATCCCGACCGGCGAGCCTGAC CTGTATCAAAAGGCGCTGGAAGGAGAGATCTACTACGGCGACGCCGACCGCGCCGTGCGCGAGACCATGTTCTCCGCCAT CGGGGCTCCCGCCAGCAGCAGGATCCTCCTGCTTCCGGTCAGGAGTTTCGGCAGGGTCATCGCCGTCATCTACGCCGATT TCGGCTCCAGCGCCGGGGGCGATCCTCAACTGCAGCTGCTCGAGATCCTCTCCCAGCATGCGGGGCTCATCATAGACAAC GTGCTCTACCGCAAAAGGTGCGCGCAAAAATAA
Upstream 100 bases:
>100_bases TGGCAGCCGTAGGGGAGAAGAGCCTTCCCTGGCTCGGTCCCCGAAGGTAAAGCTAACGGTTCTTCAAACCCGCAACACCA GCCAACACAAGGGTACCTGC
Downstream 100 bases:
>100_bases GCAGCAAGTTTCGATGTCATCCATTCAGTTACAGGGGGGACCATGGATTCCAAGATCTTCGTCCAAATACTTGAAATAGC CTTCAGCAAAAAGGTTTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: Response Regulator Receiver Domain-Containing Protein; Response Regulator
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MSFDGDLEHLPIVDVIQLLHATGKSGTLTLKSAKGESQLAFVDGFVVSANHVNNSVRIGQIMLDMGLITKENLDLALKEQ RSAGSQRKPIIQTLIEGGVVKTSDAYKGLEALIEMTIVEVLTWTRGTFSLDVNESVVSDDYRYFPEQVKQEIHLNTQNLL MDALRIYDERKRDGTLTPEAMFGTAEPPMPEAPAGAAEISAVDLGLEELDELERRIPQHFAPLAEELPDTPSNRLRDELT GIPVEEQQLLFRYLEQLPQPQEGAFAGTGVVLYTTDKVLRECVAAVCGASFLCATDDPSHIDAVLDQALSRQRLPLLLVD AGEPGDGAALLAFAQQRRERHPDLPIVLLASPGDYALFARAFDVGASAFLPRATRKERAGSFIADAIESCRALAGYLEKR SEEPGLALLPRFRSSFLALSEQRDPPEVTFALLQAACGFFKRGVTLVVVRSELIAERAIGASDTGAVTSVKLRIPTGEPD LYQKALEGEIYYGDADRAVRETMFSAIGAPASSRILLLPVRSFGRVIAVIYADFGSSAGGDPQLQLLEILSQHAGLIIDN VLYRKRCAQK
Sequences:
>Translated_570_residues MSFDGDLEHLPIVDVIQLLHATGKSGTLTLKSAKGESQLAFVDGFVVSANHVNNSVRIGQIMLDMGLITKENLDLALKEQ RSAGSQRKPIIQTLIEGGVVKTSDAYKGLEALIEMTIVEVLTWTRGTFSLDVNESVVSDDYRYFPEQVKQEIHLNTQNLL MDALRIYDERKRDGTLTPEAMFGTAEPPMPEAPAGAAEISAVDLGLEELDELERRIPQHFAPLAEELPDTPSNRLRDELT GIPVEEQQLLFRYLEQLPQPQEGAFAGTGVVLYTTDKVLRECVAAVCGASFLCATDDPSHIDAVLDQALSRQRLPLLLVD AGEPGDGAALLAFAQQRRERHPDLPIVLLASPGDYALFARAFDVGASAFLPRATRKERAGSFIADAIESCRALAGYLEKR SEEPGLALLPRFRSSFLALSEQRDPPEVTFALLQAACGFFKRGVTLVVVRSELIAERAIGASDTGAVTSVKLRIPTGEPD LYQKALEGEIYYGDADRAVRETMFSAIGAPASSRILLLPVRSFGRVIAVIYADFGSSAGGDPQLQLLEILSQHAGLIIDN VLYRKRCAQK >Mature_569_residues SFDGDLEHLPIVDVIQLLHATGKSGTLTLKSAKGESQLAFVDGFVVSANHVNNSVRIGQIMLDMGLITKENLDLALKEQR SAGSQRKPIIQTLIEGGVVKTSDAYKGLEALIEMTIVEVLTWTRGTFSLDVNESVVSDDYRYFPEQVKQEIHLNTQNLLM DALRIYDERKRDGTLTPEAMFGTAEPPMPEAPAGAAEISAVDLGLEELDELERRIPQHFAPLAEELPDTPSNRLRDELTG IPVEEQQLLFRYLEQLPQPQEGAFAGTGVVLYTTDKVLRECVAAVCGASFLCATDDPSHIDAVLDQALSRQRLPLLLVDA GEPGDGAALLAFAQQRRERHPDLPIVLLASPGDYALFARAFDVGASAFLPRATRKERAGSFIADAIESCRALAGYLEKRS EEPGLALLPRFRSSFLALSEQRDPPEVTFALLQAACGFFKRGVTLVVVRSELIAERAIGASDTGAVTSVKLRIPTGEPDL YQKALEGEIYYGDADRAVRETMFSAIGAPASSRILLLPVRSFGRVIAVIYADFGSSAGGDPQLQLLEILSQHAGLIIDNV LYRKRCAQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62143; Mature: 62011
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFDGDLEHLPIVDVIQLLHATGKSGTLTLKSAKGESQLAFVDGFVVSANHVNNSVRIGQ CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCCCEEHHH IMLDMGLITKENLDLALKEQRSAGSQRKPIIQTLIEGGVVKTSDAYKGLEALIEMTIVEV HHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHH LTWTRGTFSLDVNESVVSDDYRYFPEQVKQEIHLNTQNLLMDALRIYDERKRDGTLTPEA HHHCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH MFGTAEPPMPEAPAGAAEISAVDLGLEELDELERRIPQHFAPLAEELPDTPSNRLRDELT HCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC GIPVEEQQLLFRYLEQLPQPQEGAFAGTGVVLYTTDKVLRECVAAVCGASFLCATDDPSH CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCHHH IDAVLDQALSRQRLPLLLVDAGEPGDGAALLAFAQQRRERHPDLPIVLLASPGDYALFAR HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH AFDVGASAFLPRATRKERAGSFIADAIESCRALAGYLEKRSEEPGLALLPRFRSSFLALS HHHCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH EQRDPPEVTFALLQAACGFFKRGVTLVVVRSELIAERAIGASDTGAVTSVKLRIPTGEPD CCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCHH LYQKALEGEIYYGDADRAVRETMFSAIGAPASSRILLLPVRSFGRVIAVIYADFGSSAGG HHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHEEEHEEECCCCCCCC DPQLQLLEILSQHAGLIIDNVLYRKRCAQK CCHHHHHHHHHHHCCHHHHHHHHHHHHCCC >Mature Secondary Structure SFDGDLEHLPIVDVIQLLHATGKSGTLTLKSAKGESQLAFVDGFVVSANHVNNSVRIGQ CCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCEEEEECCCCCCEEHHH IMLDMGLITKENLDLALKEQRSAGSQRKPIIQTLIEGGVVKTSDAYKGLEALIEMTIVEV HHHHHCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHH LTWTRGTFSLDVNESVVSDDYRYFPEQVKQEIHLNTQNLLMDALRIYDERKRDGTLTPEA HHHCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHH MFGTAEPPMPEAPAGAAEISAVDLGLEELDELERRIPQHFAPLAEELPDTPSNRLRDELT HCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC GIPVEEQQLLFRYLEQLPQPQEGAFAGTGVVLYTTDKVLRECVAAVCGASFLCATDDPSH CCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCHHH IDAVLDQALSRQRLPLLLVDAGEPGDGAALLAFAQQRRERHPDLPIVLLASPGDYALFAR HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH AFDVGASAFLPRATRKERAGSFIADAIESCRALAGYLEKRSEEPGLALLPRFRSSFLALS HHHCCHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH EQRDPPEVTFALLQAACGFFKRGVTLVVVRSELIAERAIGASDTGAVTSVKLRIPTGEPD CCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCEEEEEEEECCCCHH LYQKALEGEIYYGDADRAVRETMFSAIGAPASSRILLLPVRSFGRVIAVIYADFGSSAGG HHHHHHCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHEEEHEEECCCCCCCC DPQLQLLEILSQHAGLIIDNVLYRKRCAQK CCHHHHHHHHHHHCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA