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The map label for this gene is cspA [H]

Identifier: 197106226

GI number: 197106226

Start: 3172454

End: 3172663

Strand: Direct

Name: cspA [H]

Synonym: PHZ_c2765

Alternate gene names: 197106226

Gene position: 3172454-3172663 (Clockwise)

Preceding gene: 197106224

Following gene: 197106232

Centisome position: 79.39

GC content: 66.19

Gene sequence:

>210_bases
ATGACCTCAGGAACCGTGAAGTGGTTCAACGCCACCAAGGGCTTCGGCTTCATCCAGCCTGACGACGGCGGCACCGACGT
GTTCGTCCACATCTCCGCCGTCGAGCGCGCCGGCATGGCCGGCCTGCACGAAGGCCAGAAGCTGAGCTTCGAGGTGCAGA
AGGATCCGCGCAGCGGCAAGTCCGCCGCGGCGAACCTGCAGGCGGCCTAA

Upstream 100 bases:

>100_bases
ACTGATTGGCGGCCTGGGATCCGACCCCCGACCTCTCCGAAAATTTGATCTCACAGCTCATTCTCGGGCGTGAGAACTCG
TGTCCGGAAAGGAACGACCC

Downstream 100 bases:

>100_bases
GGCCGTCGGAGGGGCTGCGCGCCGCGCGGCCCCTCGCTCCTTCCCGAGGGCTGGGGCCCCTCCTCTTACGGAGACCCGCC
ATGGAAGACCTTACACTCTG

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTSGTVKWFNATKGFGFIQPDDGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGKSAAANLQAA

Sequences:

>Translated_69_residues
MTSGTVKWFNATKGFGFIQPDDGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGKSAAANLQAA
>Mature_68_residues
TSGTVKWFNATKGFGFIQPDDGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGKSAAANLQAA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=60, Percent_Identity=58.3333333333333, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1786841, Length=60, Percent_Identity=55, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=51.5625, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=55.3846153846154, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=51.5625, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=57, Percent_Identity=49.1228070175439, Blast_Score=65, Evalue=9e-13,
Organism=Escherichia coli, GI1787834, Length=55, Percent_Identity=49.0909090909091, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7267; Mature: 7136

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGTVKWFNATKGFGFIQPDDGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGK
CCCCEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
SAAANLQAA
CCCCEEECC
>Mature Secondary Structure 
TSGTVKWFNATKGFGFIQPDDGGTDVFVHISAVERAGMAGLHEGQKLSFEVQKDPRSGK
CCCEEEEEECCCCCCEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCC
SAAANLQAA
CCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]