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The map label for this gene is xynB [H]

Identifier: 197105924

GI number: 197105924

Start: 2818197

End: 2819837

Strand: Reverse

Name: xynB [H]

Synonym: PHZ_c2463

Alternate gene names: 197105924

Gene position: 2819837-2818197 (Counterclockwise)

Preceding gene: 197105925

Following gene: 197105920

Centisome position: 70.56

GC content: 71.6

Gene sequence:

>1641_bases
ATGAGCGTGCGCAATCCCGTCCTGCGCGGCTTCAACCCCGACCCGTCGATCGTACGGGTGGGCGAGGACTACTACCTCGC
CACCTCGACCTTCGAGTGGTTTCCCGGCGTGCAGATCCACCACTCGCGCGACCTGGTGAACTGGCGCCTGGCCGCGCGGC
CGCTGAACCGCCCGGGCCAGCTCGACATGCGCGGCGATCCGGACGGATGCGGCGTCTGGGCGCCGTGCCTCAGCCATGCG
GACGGCCTGTTCCACCTGATCTACACCGACGTGAAGCGCTACGGCCGCACGACGGTGGGCGGCGCGTCGGGCGCCTCGCT
GCGCGACTTCCACAACTACCTGGTCACCTCGCCGACGATCGACGGGGGCTGGTCGGATCCGGTCCATCTGAATTCGAGCG
GCTTCGACCCCTCGCTGTTCCACGACGACGACCGCCGCAAGTACCTGCTGAACATGCTCTGGGACCATCGCCCGGGCCGC
AACCGCTTCGCCGGCATCGTCTGCCAGGAGTACTCGCCCGCCGAGCGCCGGCTGGTCGGCGAACGGCGGGTGATCTTCGA
GGGCACGCCGCTGGGGCTGACCGAGGCGCCCCACCTCTATCGCCGCGACGGCTGGTATCACCTGCTGGTGGCGGAAGGCG
GCACCGGCTGGGGCCACGCCGTGGTGATGGCCCGTTCCCGCCAGCTCTGGGGCCCGTACGAGCTGCACCCGGACGGGCCG
GTGCTGACGGCGCGCGACCGGCCGCACGCCCCGCTCCAGCGGGCCGGGCACGCGGATTTGGTGGAGACGCCGGATTGCCG
CACGTTCGCGGTCTATCTGTGCGGGCGGCCGCTGCCGAACCGCGGCCGCTGCGTGCTCGGCCGCGAGACGGCGATCCAGG
AGATGACCTGGGGCGACGACGGGTGGCTGCGTACCCAGGACAGCCGGGGCGATCCCGAGCTGGAGATCGAGCCGCCGCTG
CCGCTCCAGCCCTGGCCGGCGTCGCCCGTGCGGCGGGACTTCGACGATCCGCACCTGCCCGAGGAGTTCCAGTGGCTGCG
CACGCCGCATCCGGAGGAGATCTTCAGCCTGACGGAGCGCCCCGGTTCCTTGCGCCTCTATGGCCGCGAGAGCCTGGGCA
GCCTGTTCCGCCAGGCGCTGGTCGCGCGGCGCCAGCAGGCCTTCTGCTACTCGGCGGCCACGCGGATGATGTTCGATCCC
GAGCACTTCCAGCAGGCCGCGGGGCTGGTCTGCTACTACAACGGCTCGAAGTCCCACTACCTGATGGTCACCCGCGACGA
GGCCCTCGGCCGCTGCGTGCAGGCGATGTCGGCCCTGCCGGACTCGCCCCAAGCCGACGCCTTCACCCGGCCCGTCGCGA
TCCCTGACGGTCCCGTCGAGCTCCGCGTCGAGGTCGACTACGAGCGGCTGCGGTTCGCCTGGCGCGCCGCTGGCGAGGGA
GGGGAGGGCGCCTGGACCTGGCTGCCAGAGGTGTTCGACGCCTCCATCCTCTCGGACGAGGCGACCCAGCCCGGCGCGCC
CAACTTCACCGGCGCCTTCGTCGGAGTCTGCTGCCAGGACACGTCGGGGGCGGGCAGGCCGGCCGACTTCGACTGGTTCG
AGTACGCCGAGCGGGACTACCGGGCCGACCCAACCACCTGA

Upstream 100 bases:

>100_bases
TCCTCGCCCTCGGCCTCCTGGACCTCGTCGGGGCGGCGGTCCTCTGGACCCTGGTGCGCGACCGGCCGGTGCGGGCTCCG
GTCTCGGAGCTGCCGGCGGC

Downstream 100 bases:

>100_bases
GCCTTCAGCTCGCCGTCGAAGCGCTGCCCGCCGAGCACCACGCTCTCCAGCGTCAGCCGCTCGACGTTCTCCAGCACCCA
GGGGACCTTGGCCTCGCGCA

Product: xylan 1,4-beta-xylosidase

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MSVRNPVLRGFNPDPSIVRVGEDYYLATSTFEWFPGVQIHHSRDLVNWRLAARPLNRPGQLDMRGDPDGCGVWAPCLSHA
DGLFHLIYTDVKRYGRTTVGGASGASLRDFHNYLVTSPTIDGGWSDPVHLNSSGFDPSLFHDDDRRKYLLNMLWDHRPGR
NRFAGIVCQEYSPAERRLVGERRVIFEGTPLGLTEAPHLYRRDGWYHLLVAEGGTGWGHAVVMARSRQLWGPYELHPDGP
VLTARDRPHAPLQRAGHADLVETPDCRTFAVYLCGRPLPNRGRCVLGRETAIQEMTWGDDGWLRTQDSRGDPELEIEPPL
PLQPWPASPVRRDFDDPHLPEEFQWLRTPHPEEIFSLTERPGSLRLYGRESLGSLFRQALVARRQQAFCYSAATRMMFDP
EHFQQAAGLVCYYNGSKSHYLMVTRDEALGRCVQAMSALPDSPQADAFTRPVAIPDGPVELRVEVDYERLRFAWRAAGEG
GEGAWTWLPEVFDASILSDEATQPGAPNFTGAFVGVCCQDTSGAGRPADFDWFEYAERDYRADPTT

Sequences:

>Translated_546_residues
MSVRNPVLRGFNPDPSIVRVGEDYYLATSTFEWFPGVQIHHSRDLVNWRLAARPLNRPGQLDMRGDPDGCGVWAPCLSHA
DGLFHLIYTDVKRYGRTTVGGASGASLRDFHNYLVTSPTIDGGWSDPVHLNSSGFDPSLFHDDDRRKYLLNMLWDHRPGR
NRFAGIVCQEYSPAERRLVGERRVIFEGTPLGLTEAPHLYRRDGWYHLLVAEGGTGWGHAVVMARSRQLWGPYELHPDGP
VLTARDRPHAPLQRAGHADLVETPDCRTFAVYLCGRPLPNRGRCVLGRETAIQEMTWGDDGWLRTQDSRGDPELEIEPPL
PLQPWPASPVRRDFDDPHLPEEFQWLRTPHPEEIFSLTERPGSLRLYGRESLGSLFRQALVARRQQAFCYSAATRMMFDP
EHFQQAAGLVCYYNGSKSHYLMVTRDEALGRCVQAMSALPDSPQADAFTRPVAIPDGPVELRVEVDYERLRFAWRAAGEG
GEGAWTWLPEVFDASILSDEATQPGAPNFTGAFVGVCCQDTSGAGRPADFDWFEYAERDYRADPTT
>Mature_545_residues
SVRNPVLRGFNPDPSIVRVGEDYYLATSTFEWFPGVQIHHSRDLVNWRLAARPLNRPGQLDMRGDPDGCGVWAPCLSHAD
GLFHLIYTDVKRYGRTTVGGASGASLRDFHNYLVTSPTIDGGWSDPVHLNSSGFDPSLFHDDDRRKYLLNMLWDHRPGRN
RFAGIVCQEYSPAERRLVGERRVIFEGTPLGLTEAPHLYRRDGWYHLLVAEGGTGWGHAVVMARSRQLWGPYELHPDGPV
LTARDRPHAPLQRAGHADLVETPDCRTFAVYLCGRPLPNRGRCVLGRETAIQEMTWGDDGWLRTQDSRGDPELEIEPPLP
LQPWPASPVRRDFDDPHLPEEFQWLRTPHPEEIFSLTERPGSLRLYGRESLGSLFRQALVARRQQAFCYSAATRMMFDPE
HFQQAAGLVCYYNGSKSHYLMVTRDEALGRCVQAMSALPDSPQADAFTRPVAIPDGPVELRVEVDYERLRFAWRAAGEGG
EGAWTWLPEVFDASILSDEATQPGAPNFTGAFVGVCCQDTSGAGRPADFDWFEYAERDYRADPTT

Specific function: Beta-xylosidase is an intracellular xylan-degrading enzyme [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=549, Percent_Identity=46.0837887067395, Blast_Score=453, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 61505; Mature: 61374

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRNPVLRGFNPDPSIVRVGEDYYLATSTFEWFPGVQIHHSRDLVNWRLAARPLNRPGQ
CCCCCCHHCCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCC
LDMRGDPDGCGVWAPCLSHADGLFHLIYTDVKRYGRTTVGGASGASLRDFHNYLVTSPTI
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCC
DGGWSDPVHLNSSGFDPSLFHDDDRRKYLLNMLWDHRPGRNRFAGIVCQEYSPAERRLVG
CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHC
ERRVIFEGTPLGLTEAPHLYRRDGWYHLLVAEGGTGWGHAVVMARSRQLWGPYELHPDGP
CCEEEEECCCCCCCCCCCHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCC
VLTARDRPHAPLQRAGHADLVETPDCRTFAVYLCGRPLPNRGRCVLGRETAIQEMTWGDD
EEECCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECHHHHHHCCCCCC
GWLRTQDSRGDPELEIEPPLPLQPWPASPVRRDFDDPHLPEEFQWLRTPHPEEIFSLTER
CEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
PGSLRLYGRESLGSLFRQALVARRQQAFCYSAATRMMFDPEHFQQAAGLVCYYNGSKSHY
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHCCEEEEEECCCCEE
LMVTRDEALGRCVQAMSALPDSPQADAFTRPVAIPDGPVELRVEVDYERLRFAWRAAGEG
EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHCCCC
GEGAWTWLPEVFDASILSDEATQPGAPNFTGAFVGVCCQDTSGAGRPADFDWFEYAERDY
CCCCEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHC
RADPTT
CCCCCC
>Mature Secondary Structure 
SVRNPVLRGFNPDPSIVRVGEDYYLATSTFEWFPGVQIHHSRDLVNWRLAARPLNRPGQ
CCCCCHHCCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCCEEEEEEECCCCCCCC
LDMRGDPDGCGVWAPCLSHADGLFHLIYTDVKRYGRTTVGGASGASLRDFHNYLVTSPTI
CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHEECCCC
DGGWSDPVHLNSSGFDPSLFHDDDRRKYLLNMLWDHRPGRNRFAGIVCQEYSPAERRLVG
CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHC
ERRVIFEGTPLGLTEAPHLYRRDGWYHLLVAEGGTGWGHAVVMARSRQLWGPYELHPDGP
CCEEEEECCCCCCCCCCCHHCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCC
VLTARDRPHAPLQRAGHADLVETPDCRTFAVYLCGRPLPNRGRCVLGRETAIQEMTWGDD
EEECCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECHHHHHHCCCCCC
GWLRTQDSRGDPELEIEPPLPLQPWPASPVRRDFDDPHLPEEFQWLRTPHPEEIFSLTER
CEEEECCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHCC
PGSLRLYGRESLGSLFRQALVARRQQAFCYSAATRMMFDPEHFQQAAGLVCYYNGSKSHY
CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHCCEEEEEECCCCEE
LMVTRDEALGRCVQAMSALPDSPQADAFTRPVAIPDGPVELRVEVDYERLRFAWRAAGEG
EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCEEEEEEECHHHHHHHHHHCCCC
GEGAWTWLPEVFDASILSDEATQPGAPNFTGAFVGVCCQDTSGAGRPADFDWFEYAERDY
CCCCEEECHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHC
RADPTT
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2440680; 1765080 [H]