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The map label for this gene is rbsR [H]

Identifier: 197105917

GI number: 197105917

Start: 2807770

End: 2808822

Strand: Reverse

Name: rbsR [H]

Synonym: PHZ_c2456

Alternate gene names: 197105917

Gene position: 2808822-2807770 (Counterclockwise)

Preceding gene: 197105920

Following gene: 197105913

Centisome position: 70.29

GC content: 71.42

Gene sequence:

>1053_bases
ATGAAGAAGGCGCCGCGCGCCCCGGACGACGCTCTCGAGACGCCGCGCCGCCGGCCGACCATCAACGACATCGCCCGCCT
GGCGGGGGTGTCGAAGAAGACGGTCTCGCGGGTGATCAACGCCTCGCCGTTCGTCCGCTCCGACACCCGCGACCGCATCC
AGGCGGTGATCGCGGAGCTAGGCTATGCGCCCGACCCGCAGGCGCGGGGGCTGGCCTACGGCCGCTCGTTCCTGATCGGC
CTCGTCTACGACAACCCCAATCCCCAGTACGTCGTGAACATGCAGCTCGGGCTGCTGGACGGCATGAAGGGATCGGGGTT
CGAGCTGGTCGTGCATCCCTGCGACCGCGAGAGCCCGACGTTCCTGGAGGACCTGCGCGCCTTCATCGAGCGCCAGCGGC
TGTTCGGGGTGGTGCTGACGCCTTCCGTCTCCGAGGACGAGCGCGCGGCCAAGCTGATGAGCGACATCGGCTGCGCCTAT
GTGCGGGTGGCGTCGGTCAGTCTGGACACGCCGGAACACATGATCGAGACCCGCGACCGCCTGGGCGGCCGCGAGGCGGC
GCGGCACCTGGCCGAGCTCGGCCACACGCGCATCGGCTTCATCTCGGGCCCCGCCAGCTTCCGCTCGTCGCACGAGCGGC
GCTCGGGTTTCGAGGAGGCGCTGAACGAGCACGGCCTGACCCTGTCGCGGACCTATGTGGCCGAGGGCGCCTACACCTTC
GATTCCGGGGTCGAGCGCGGCCGCGAGCTGCTGGCGATCGAGCCGCGGCCGACCGCGATCTTCGCCGCCAACGACGAGAT
GGCCGCCGGCGTGCTGCAGGCCGCCCGGCAGGCTGGCCTGCGCATCCCCGAGGACCTGTCGGTGGTGGGCTTCGACGACT
TCCAGATCGCCTCGCGCCTGTGGCCGGCGCTCACCACCGTCCGCACCCCGACGCGGGAGATCGGCCGTCTGGCGGTCGAG
CGGCTGCTGGGCCGCGACGACGACGTCCGCGACCCGAAGAACCGGCTGCCGTCCCTGGTGGTGCGGGACTCCACCGCCCC
GCTGAAAGGCTAG

Upstream 100 bases:

>100_bases
AGCGGCGGCGTCGCATTCCGTGCGATCCGTACAAACCCGGATTTTGAATCTCCCGCGCTTGCGATTAGTGGTCTGGCTTG
AACCGATCTGAGGCCCCTGG

Downstream 100 bases:

>100_bases
GGCTTCGCGGGCAGCGGATAGGAGACGATCAGGACGAGATCCTGGTCGCCGACCTGGGCGATCCCCACCTCGGCGCCGCG
ATAGAGGTAGGCCGCCCCGC

Product: transcriptional regulator, LacI family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKKAPRAPDDALETPRRRPTINDIARLAGVSKKTVSRVINASPFVRSDTRDRIQAVIAELGYAPDPQARGLAYGRSFLIG
LVYDNPNPQYVVNMQLGLLDGMKGSGFELVVHPCDRESPTFLEDLRAFIERQRLFGVVLTPSVSEDERAAKLMSDIGCAY
VRVASVSLDTPEHMIETRDRLGGREAARHLAELGHTRIGFISGPASFRSSHERRSGFEEALNEHGLTLSRTYVAEGAYTF
DSGVERGRELLAIEPRPTAIFAANDEMAAGVLQAARQAGLRIPEDLSVVGFDDFQIASRLWPALTTVRTPTREIGRLAVE
RLLGRDDDVRDPKNRLPSLVVRDSTAPLKG

Sequences:

>Translated_350_residues
MKKAPRAPDDALETPRRRPTINDIARLAGVSKKTVSRVINASPFVRSDTRDRIQAVIAELGYAPDPQARGLAYGRSFLIG
LVYDNPNPQYVVNMQLGLLDGMKGSGFELVVHPCDRESPTFLEDLRAFIERQRLFGVVLTPSVSEDERAAKLMSDIGCAY
VRVASVSLDTPEHMIETRDRLGGREAARHLAELGHTRIGFISGPASFRSSHERRSGFEEALNEHGLTLSRTYVAEGAYTF
DSGVERGRELLAIEPRPTAIFAANDEMAAGVLQAARQAGLRIPEDLSVVGFDDFQIASRLWPALTTVRTPTREIGRLAVE
RLLGRDDDVRDPKNRLPSLVVRDSTAPLKG
>Mature_350_residues
MKKAPRAPDDALETPRRRPTINDIARLAGVSKKTVSRVINASPFVRSDTRDRIQAVIAELGYAPDPQARGLAYGRSFLIG
LVYDNPNPQYVVNMQLGLLDGMKGSGFELVVHPCDRESPTFLEDLRAFIERQRLFGVVLTPSVSEDERAAKLMSDIGCAY
VRVASVSLDTPEHMIETRDRLGGREAARHLAELGHTRIGFISGPASFRSSHERRSGFEEALNEHGLTLSRTYVAEGAYTF
DSGVERGRELLAIEPRPTAIFAANDEMAAGVLQAARQAGLRIPEDLSVVGFDDFQIASRLWPALTTVRTPTREIGRLAVE
RLLGRDDDVRDPKNRLPSLVVRDSTAPLKG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=316, Percent_Identity=34.8101265822785, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1787948, Length=339, Percent_Identity=31.2684365781711, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1788474, Length=337, Percent_Identity=32.6409495548961, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1790369, Length=311, Percent_Identity=29.903536977492, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1786540, Length=338, Percent_Identity=31.6568047337278, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI1789068, Length=347, Percent_Identity=31.700288184438, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1789202, Length=291, Percent_Identity=31.2714776632302, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787580, Length=320, Percent_Identity=26.25, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI48994940, Length=314, Percent_Identity=25.1592356687898, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790715, Length=316, Percent_Identity=24.6835443037975, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787906, Length=318, Percent_Identity=23.2704402515723, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1789456, Length=348, Percent_Identity=28.448275862069, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786268, Length=321, Percent_Identity=23.6760124610592, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 38555; Mature: 38555

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAPRAPDDALETPRRRPTINDIARLAGVSKKTVSRVINASPFVRSDTRDRIQAVIAEL
CCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
GYAPDPQARGLAYGRSFLIGLVYDNPNPQYVVNMQLGLLDGMKGSGFELVVHPCDRESPT
CCCCCCCCCHHHHCCEEEEEEEEECCCCCEEEEEEEEHCCCCCCCCCEEEEECCCCCCCH
FLEDLRAFIERQRLFGVVLTPSVSEDERAAKLMSDIGCAYVRVASVSLDTPEHMIETRDR
HHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHHHHH
LGGREAARHLAELGHTRIGFISGPASFRSSHERRSGFEEALNEHGLTLSRTYVAEGAYTF
CCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCHH
DSGVERGRELLAIEPRPTAIFAANDEMAAGVLQAARQAGLRIPEDLSVVGFDDFQIASRL
HHHHHCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH
WPALTTVRTPTREIGRLAVERLLGRDDDVRDPKNRLPSLVVRDSTAPLKG
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEECCCCCCCC
>Mature Secondary Structure
MKKAPRAPDDALETPRRRPTINDIARLAGVSKKTVSRVINASPFVRSDTRDRIQAVIAEL
CCCCCCCCCHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
GYAPDPQARGLAYGRSFLIGLVYDNPNPQYVVNMQLGLLDGMKGSGFELVVHPCDRESPT
CCCCCCCCCHHHHCCEEEEEEEEECCCCCEEEEEEEEHCCCCCCCCCEEEEECCCCCCCH
FLEDLRAFIERQRLFGVVLTPSVSEDERAAKLMSDIGCAYVRVASVSLDTPEHMIETRDR
HHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCHHHEEEEEECCCCHHHHHHHHHH
LGGREAARHLAELGHTRIGFISGPASFRSSHERRSGFEEALNEHGLTLSRTYVAEGAYTF
CCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCHH
DSGVERGRELLAIEPRPTAIFAANDEMAAGVLQAARQAGLRIPEDLSVVGFDDFQIASRL
HHHHHCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHH
WPALTTVRTPTREIGRLAVERLLGRDDDVRDPKNRLPSLVVRDSTAPLKG
HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]