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The map label for this gene is ydeM [C]

Identifier: 197105881

GI number: 197105881

Start: 2759579

End: 2761012

Strand: Reverse

Name: ydeM [C]

Synonym: PHZ_c2420

Alternate gene names: 197105881

Gene position: 2761012-2759579 (Counterclockwise)

Preceding gene: 197105882

Following gene: 197105880

Centisome position: 69.09

GC content: 67.57

Gene sequence:

>1434_bases
ATGTTGCGAACGTCGCCTCTGCGGGGCGGCAAGGTGCTGGTGTCGAGTGACCTCGGCGACTACGCCCTGCTAAGCGAGGA
CGAGGAGCGCCTGCGGCGGGCAGGCGGCGGCGGCCTGCCGGAAGCGCGCAGGCAGGATCTGCTCGCCCGCGGTCTGCTGA
CGACGCACGAATGTCCAGAAGACCTGCGGGCCGCCACCCTGCGGACGCGCAAGGCCTTCCTGATGGAGGGGCCGACCCTC
CACATCTTCGTGGTCACGCTGAGGTGCGATCACAGCTGTCACTACTGTCAGGTTTCCCGCGCAGCCATAGGCGCGCCAGG
CTTCGACATGAGCGAGGCCGATGCGGAAGCCGCGCTCGATCGGGTCTTCGAAAGCCCCGCGCGGGATCTCACCATCGAGT
TCCAGGGCGGGGAGCCGGCTCTGCGATTCGATCTCGTGAAGCGGATCGTCCAGAGCGCCGTCGGTCGGAATGCCGGCGGC
GGCAAGGCGCTACGCTTCACGATGGTCTCGACCCTGCACCATCTGAACGCCGAGGATCTGGCGTTCTGCGCCGAACATGA
CATCCATCTGTCAACGTCGATCGACGGACCTGCGCAGATCCATGATGCGCAGCGCCCGAACCCCACGCGCGACGCATTTT
CCAGGACGATCGAGGGTCTCGACCGGGCGCGAGCCGTGCTTGGGGCCGATGGGGTTGCGGCGCTGCCGACCGTGACGCGC
GCCGCGCTGTCCGATCCACGCGGACTGATCGACCAGTACCGGGAGCTGGGCTTTCGTTCGATCTTCCTGCGCCCCCTCAG
TCCCTACGGGTTTGCGCGCAAGACGCGGCGGGTGCACGGCTACGACACGGACGTCTTCGCCGCTTTCTATCGGGAAGCGC
TGGCCTACATCCTGGAGCTCAATGCGGCGGGTCAGCCGATGGAGGAGGTCTACGCCAGCATCCTCCTGCGGCACATCTGG
AGCCCGTTCCATTCCGGCTATACCGATCTGCGCTCGCCGGCCGGCGCCGGTCTGGGCGTGATGGTCTACAACTACGATGG
GATCGCCTATCCGTCGGACGAAGCTCGTATGGCGGCGGAGACGGGGGACCGCCGCTTCGCGCTAGGAAGGGTCGACCAGT
CCCTGGACACACTGCTGGCGTCGCCGGCGATGGCCTGGCTTGCCCAGGGGGCCGTGGCGGAACGGCTGCCCGGCTGCGCC
CAATGCGCCTTTGTGCCGTTCTGCGGAGCCGACCCTGTCCATCATGCGGTGCTGACCGGCGAACCGGCCGGCGTGCATCC
GGGCAGCGACTTCTGCCAGCGGCAGACCGCGATGTTTGAGCTGCTCTTCGAGCATATCGATCGCGGCGAGCCCGAGACGC
TGCGCACCTTCCTGGCCTGGGCCTTCCGCAGGTCCCGCGACGAGGTTCGCGCACCTGGCTACGTGGAGCGCTGA

Upstream 100 bases:

>100_bases
TCGCGGCGCAAGGTAGGTATCGGCTGTCGCCACAACTCCAGGACGCTATTGCAGCGCCTGATCGTGGCGCATAGGTTTCC
CTGGGGTCGGGGGGCTTCCC

Downstream 100 bases:

>100_bases
GATGGCGCTCGCGCTTCATACCCACGCGCGCGTCGAGGGCCTCGAGCGGACTGAGCTGCTGAAGGTGCTGAGCCCGCAGG
AGGCGGCGCAGTCCCACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; AslB/AtsB Family Protein; Heme Biosynthesis Family Protein; Co PQQ Synthesis Protein E; Qinohemoprotein Amine Dehydrogenase; Radical SAM Superfamily Protein; Radical SAM Protein; Radical SAM

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MLRTSPLRGGKVLVSSDLGDYALLSEDEERLRRAGGGGLPEARRQDLLARGLLTTHECPEDLRAATLRTRKAFLMEGPTL
HIFVVTLRCDHSCHYCQVSRAAIGAPGFDMSEADAEAALDRVFESPARDLTIEFQGGEPALRFDLVKRIVQSAVGRNAGG
GKALRFTMVSTLHHLNAEDLAFCAEHDIHLSTSIDGPAQIHDAQRPNPTRDAFSRTIEGLDRARAVLGADGVAALPTVTR
AALSDPRGLIDQYRELGFRSIFLRPLSPYGFARKTRRVHGYDTDVFAAFYREALAYILELNAAGQPMEEVYASILLRHIW
SPFHSGYTDLRSPAGAGLGVMVYNYDGIAYPSDEARMAAETGDRRFALGRVDQSLDTLLASPAMAWLAQGAVAERLPGCA
QCAFVPFCGADPVHHAVLTGEPAGVHPGSDFCQRQTAMFELLFEHIDRGEPETLRTFLAWAFRRSRDEVRAPGYVER

Sequences:

>Translated_477_residues
MLRTSPLRGGKVLVSSDLGDYALLSEDEERLRRAGGGGLPEARRQDLLARGLLTTHECPEDLRAATLRTRKAFLMEGPTL
HIFVVTLRCDHSCHYCQVSRAAIGAPGFDMSEADAEAALDRVFESPARDLTIEFQGGEPALRFDLVKRIVQSAVGRNAGG
GKALRFTMVSTLHHLNAEDLAFCAEHDIHLSTSIDGPAQIHDAQRPNPTRDAFSRTIEGLDRARAVLGADGVAALPTVTR
AALSDPRGLIDQYRELGFRSIFLRPLSPYGFARKTRRVHGYDTDVFAAFYREALAYILELNAAGQPMEEVYASILLRHIW
SPFHSGYTDLRSPAGAGLGVMVYNYDGIAYPSDEARMAAETGDRRFALGRVDQSLDTLLASPAMAWLAQGAVAERLPGCA
QCAFVPFCGADPVHHAVLTGEPAGVHPGSDFCQRQTAMFELLFEHIDRGEPETLRTFLAWAFRRSRDEVRAPGYVER
>Mature_477_residues
MLRTSPLRGGKVLVSSDLGDYALLSEDEERLRRAGGGGLPEARRQDLLARGLLTTHECPEDLRAATLRTRKAFLMEGPTL
HIFVVTLRCDHSCHYCQVSRAAIGAPGFDMSEADAEAALDRVFESPARDLTIEFQGGEPALRFDLVKRIVQSAVGRNAGG
GKALRFTMVSTLHHLNAEDLAFCAEHDIHLSTSIDGPAQIHDAQRPNPTRDAFSRTIEGLDRARAVLGADGVAALPTVTR
AALSDPRGLIDQYRELGFRSIFLRPLSPYGFARKTRRVHGYDTDVFAAFYREALAYILELNAAGQPMEEVYASILLRHIW
SPFHSGYTDLRSPAGAGLGVMVYNYDGIAYPSDEARMAAETGDRRFALGRVDQSLDTLLASPAMAWLAQGAVAERLPGCA
QCAFVPFCGADPVHHAVLTGEPAGVHPGSDFCQRQTAMFELLFEHIDRGEPETLRTFLAWAFRRSRDEVRAPGYVER

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52351; Mature: 52351

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTSPLRGGKVLVSSDLGDYALLSEDEERLRRAGGGGLPEARRQDLLARGLLTTHECPE
CCCCCCCCCCEEEEECCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
DLRAATLRTRKAFLMEGPTLHIFVVTLRCDHSCHYCQVSRAAIGAPGFDMSEADAEAALD
HHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
RVFESPARDLTIEFQGGEPALRFDLVKRIVQSAVGRNAGGGKALRFTMVSTLHHLNAEDL
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHH
AFCAEHDIHLSTSIDGPAQIHDAQRPNPTRDAFSRTIEGLDRARAVLGADGVAALPTVTR
HHHHCCCEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AALSDPRGLIDQYRELGFRSIFLRPLSPYGFARKTRRVHGYDTDVFAAFYREALAYILEL
HHHCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAAGQPMEEVYASILLRHIWSPFHSGYTDLRSPAGAGLGVMVYNYDGIAYPSDEARMAAE
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHH
TGDRRFALGRVDQSLDTLLASPAMAWLAQGAVAERLPGCAQCAFVPFCGADPVHHAVLTG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHCCCCCCCCHHHHHEEEC
EPAGVHPGSDFCQRQTAMFELLFEHIDRGEPETLRTFLAWAFRRSRDEVRAPGYVER
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCC
>Mature Secondary Structure
MLRTSPLRGGKVLVSSDLGDYALLSEDEERLRRAGGGGLPEARRQDLLARGLLTTHECPE
CCCCCCCCCCEEEEECCCCCCHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
DLRAATLRTRKAFLMEGPTLHIFVVTLRCDHSCHYCQVSRAAIGAPGFDMSEADAEAALD
HHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
RVFESPARDLTIEFQGGEPALRFDLVKRIVQSAVGRNAGGGKALRFTMVSTLHHLNAEDL
HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHH
AFCAEHDIHLSTSIDGPAQIHDAQRPNPTRDAFSRTIEGLDRARAVLGADGVAALPTVTR
HHHHCCCEEEECCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
AALSDPRGLIDQYRELGFRSIFLRPLSPYGFARKTRRVHGYDTDVFAAFYREALAYILEL
HHHCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
NAAGQPMEEVYASILLRHIWSPFHSGYTDLRSPAGAGLGVMVYNYDGIAYPSDEARMAAE
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHH
TGDRRFALGRVDQSLDTLLASPAMAWLAQGAVAERLPGCAQCAFVPFCGADPVHHAVLTG
CCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCHHHHCCCCCCCCHHHHHEEEC
EPAGVHPGSDFCQRQTAMFELLFEHIDRGEPETLRTFLAWAFRRSRDEVRAPGYVER
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA