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The map label for this gene is radC [C]

Identifier: 197105875

GI number: 197105875

Start: 2750367

End: 2751137

Strand: Reverse

Name: radC [C]

Synonym: PHZ_c2414

Alternate gene names: 197105875

Gene position: 2751137-2750367 (Counterclockwise)

Preceding gene: 197105877

Following gene: 197105874

Centisome position: 68.84

GC content: 69.26

Gene sequence:

>771_bases
TTGGTCTGGCCGTGCTTCCGGAGCCAGGGCTGGGGGGGCAGCGGAGCCTGGAGGAGGAGGAAAGAAGGGCTGGGAGGGGC
GGTCCCGCGAAGGGGGCCGTGCTGTTCCCAGGAGGCCGCGATGGATGCGGCGATCAATCAAGCCGGCGATTCTGAAGCCG
CAGCTCAGCTGAGCGATGCTGAGCTGGTTGCGCGGGTTATCGACCCGCGCCGCCGCTCTCGCGACAGCGAGGCTCGCGCG
CGGCTCTGCCTCGAGAGTTGCGGCGGCCTCGGGCCGGCGCTGGCGCTGGCCGATCCGCGACTGGAGCGGCAGATCGGAGC
CGAGGCCTGCCTGCAGCTGCGCCTGGTTCGCGAGGCCTCGATCCGAACCACGCGCGGCGCAGTCATCTCGAGGCGCTTCG
ACGCCAATGCGAAGCGGACCCACGACTACCTGCGCGCGCTGCTCGAATTCGAGACGCGGGAGTCCTTCCGCGTGATCTTC
CTCGACGCGTCCGGCGCGTGGAGCAGCGACGAAGAACTTGGTCGCGGCACCGTCGATCATGCGCCGGTGTACGTCCGTGA
AGTCATGAGGGAGGCTCTGCGCCGCGACGCCGCCGCACTGGTGCTGGTCCACAACCACCCGTCCGGAGATCCGACACCCT
CGGCCGCGGACGTTCAGGTGACCTCAGAGATCGCAGCGGCCGCATCAGCCCTGGGCATGAGCGTCAAGGATCACCTGGTG
GTCGGGTCGCATGGCGTCGCGAGCTTCCAGGCGCTGGGGCTCCTGTCATGA

Upstream 100 bases:

>100_bases
TGCCGGGCTGGTCGGGACAGGATAGCGTCAGGATCATCGAGGCCGCCCGTGCCAACCTCAGTGAGCCCGGTCAAGGCTGA
CACAGGGTGACCCTGTCCAG

Downstream 100 bases:

>100_bases
TCCCGACCCTGGCCGGCGTGGTTCGCGTTCTCGGCGGGGAGCTCTATGCCGGTGGACGGCAGGCGAGCATCGCGGGACCG
GGCCACAGCTCCAGCGACAG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MVWPCFRSQGWGGSGAWRRRKEGLGGAVPRRGPCCSQEAAMDAAINQAGDSEAAAQLSDAELVARVIDPRRRSRDSEARA
RLCLESCGGLGPALALADPRLERQIGAEACLQLRLVREASIRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIF
LDASGAWSSDEELGRGTVDHAPVYVREVMREALRRDAAALVLVHNHPSGDPTPSAADVQVTSEIAAAASALGMSVKDHLV
VGSHGVASFQALGLLS

Sequences:

>Translated_256_residues
MVWPCFRSQGWGGSGAWRRRKEGLGGAVPRRGPCCSQEAAMDAAINQAGDSEAAAQLSDAELVARVIDPRRRSRDSEARA
RLCLESCGGLGPALALADPRLERQIGAEACLQLRLVREASIRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIF
LDASGAWSSDEELGRGTVDHAPVYVREVMREALRRDAAALVLVHNHPSGDPTPSAADVQVTSEIAAAASALGMSVKDHLV
VGSHGVASFQALGLLS
>Mature_256_residues
MVWPCFRSQGWGGSGAWRRRKEGLGGAVPRRGPCCSQEAAMDAAINQAGDSEAAAQLSDAELVARVIDPRRRSRDSEARA
RLCLESCGGLGPALALADPRLERQIGAEACLQLRLVREASIRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIF
LDASGAWSSDEELGRGTVDHAPVYVREVMREALRRDAAALVLVHNHPSGDPTPSAADVQVTSEIAAAASALGMSVKDHLV
VGSHGVASFQALGLLS

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=195, Percent_Identity=32.8205128205128, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=44.6601941747573, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=40.3508771929825, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788997, Length=114, Percent_Identity=38.5964912280702, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27495; Mature: 27495

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVWPCFRSQGWGGSGAWRRRKEGLGGAVPRRGPCCSQEAAMDAAINQAGDSEAAAQLSDA
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
ELVARVIDPRRRSRDSEARARLCLESCGGLGPALALADPRLERQIGAEACLQLRLVREAS
HHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIFLDASGAWSSDEELGRGTVDH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCCCCC
APVYVREVMREALRRDAAALVLVHNHPSGDPTPSAADVQVTSEIAAAASALGMSVKDHLV
CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHEEE
VGSHGVASFQALGLLS
ECCCCHHHHHHHCCCC
>Mature Secondary Structure
MVWPCFRSQGWGGSGAWRRRKEGLGGAVPRRGPCCSQEAAMDAAINQAGDSEAAAQLSDA
CCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
ELVARVIDPRRRSRDSEARARLCLESCGGLGPALALADPRLERQIGAEACLQLRLVREAS
HHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
IRTTRGAVISRRFDANAKRTHDYLRALLEFETRESFRVIFLDASGAWSSDEELGRGTVDH
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHCCCCCCC
APVYVREVMREALRRDAAALVLVHNHPSGDPTPSAADVQVTSEIAAAASALGMSVKDHLV
CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHEEE
VGSHGVASFQALGLLS
ECCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA