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The map label for this gene is yncC [C]

Identifier: 197105861

GI number: 197105861

Start: 2734422

End: 2735045

Strand: Reverse

Name: yncC [C]

Synonym: PHZ_c2400

Alternate gene names: 197105861

Gene position: 2735045-2734422 (Counterclockwise)

Preceding gene: 197105862

Following gene: 197105860

Centisome position: 68.44

GC content: 72.44

Gene sequence:

>624_bases
ATGCCGGCGTCCGGCCCAGAACCGTTTCATCGCGCGCTGGCCGCCCTGCGATCCTGGCTTCAAGAAGGACGCTTCGCGCC
TGGCGCGAAGCTGGCGGCCGTGGAGCTCGCCGAGGAGCTGCGGCTGAGCGCGACGCCGGTTCGCGAGGCGATGGCGCGGC
TGGCGGGCGAAGGGGTGCTCGAAGAACGCCGCGGTCAGGGCTTCTATGTCGCCCACCTGACCCGCGCGGACATCGCCGAC
CTCTACCGCGTCCATCTCGCCTGCCTCCTGATGGCCCTCGATCCGTCTCGGGAGCCGGTGTGGATCGCGCCGCCCGAAGC
CGAGACGTTCGCCAGCCCGGTGGCGGCGACCGAGTCCCTGCTGGGGAGGGTCCTGGCCCTCACGGGCAGCGCCGCGCTCT
GCGACGTCTTTCAGCTTGGCCAGACGCGGCTTGGACCGGTGCGTCGGCTGGAGCCGGAGATCTTCCCGGACCTGGAGGCG
GAGGCCGCAGCGCTGGCCGCAGGTGCGATGACCGGCGGGCCCCCGTTCATCGAACTCGTCCGGTCCTTCCATCTGCGTCG
GCTCCGGGAGGTCGACCGCCTCGGCGACCTGCTGGATCGGCGGGCGCGCACGTGGCGCGGCTGA

Upstream 100 bases:

>100_bases
CGCTGGGCCAGGTGGCCCGTAAGGGTGCGCGGCGGCGCTTCGGCCGGTTTGCCGCGCGCAGCGCCAGGTGGTCTGTGAGC
GCCAGTTCGAGTGAGGGAGT

Downstream 100 bases:

>100_bases
CGGTGGGCGGCGCCCAAAAATAGAGCCGATATAGTTTGAATGGAGCCGGGTCCGGTCGCGTCATGGGGTGGCCGCAATCG
TGCGGCGAACCCAGGAGGTT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MPASGPEPFHRALAALRSWLQEGRFAPGAKLAAVELAEELRLSATPVREAMARLAGEGVLEERRGQGFYVAHLTRADIAD
LYRVHLACLLMALDPSREPVWIAPPEAETFASPVAATESLLGRVLALTGSAALCDVFQLGQTRLGPVRRLEPEIFPDLEA
EAAALAAGAMTGGPPFIELVRSFHLRRLREVDRLGDLLDRRARTWRG

Sequences:

>Translated_207_residues
MPASGPEPFHRALAALRSWLQEGRFAPGAKLAAVELAEELRLSATPVREAMARLAGEGVLEERRGQGFYVAHLTRADIAD
LYRVHLACLLMALDPSREPVWIAPPEAETFASPVAATESLLGRVLALTGSAALCDVFQLGQTRLGPVRRLEPEIFPDLEA
EAAALAAGAMTGGPPFIELVRSFHLRRLREVDRLGDLLDRRARTWRG
>Mature_206_residues
PASGPEPFHRALAALRSWLQEGRFAPGAKLAAVELAEELRLSATPVREAMARLAGEGVLEERRGQGFYVAHLTRADIADL
YRVHLACLLMALDPSREPVWIAPPEAETFASPVAATESLLGRVLALTGSAALCDVFQLGQTRLGPVRRLEPEIFPDLEAE
AAALAAGAMTGGPPFIELVRSFHLRRLREVDRLGDLLDRRARTWRG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22565; Mature: 22434

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASGPEPFHRALAALRSWLQEGRFAPGAKLAAVELAEELRLSATPVREAMARLAGEGVL
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
EERRGQGFYVAHLTRADIADLYRVHLACLLMALDPSREPVWIAPPEAETFASPVAATESL
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
LGRVLALTGSAALCDVFQLGQTRLGPVRRLEPEIFPDLEAEAAALAAGAMTGGPPFIELV
HHHHHHHCCCHHHHHHHHHCCHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
RSFHLRRLREVDRLGDLLDRRARTWRG
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PASGPEPFHRALAALRSWLQEGRFAPGAKLAAVELAEELRLSATPVREAMARLAGEGVL
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
EERRGQGFYVAHLTRADIADLYRVHLACLLMALDPSREPVWIAPPEAETFASPVAATESL
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
LGRVLALTGSAALCDVFQLGQTRLGPVRRLEPEIFPDLEAEAAALAAGAMTGGPPFIELV
HHHHHHHCCCHHHHHHHHHCCHHCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
RSFHLRRLREVDRLGDLLDRRARTWRG
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA