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The map label for this gene is fecI [H]

Identifier: 197105855

GI number: 197105855

Start: 2724759

End: 2725310

Strand: Direct

Name: fecI [H]

Synonym: PHZ_c2394

Alternate gene names: 197105855

Gene position: 2724759-2725310 (Clockwise)

Preceding gene: 197105854

Following gene: 197105856

Centisome position: 68.18

GC content: 71.01

Gene sequence:

>552_bases
ATGCGTCCCAACGGTCAACTCGCCGAACCCGACCACCCCTTCGACGATGAAGGCCGCCCCACCGCGCCCGCGGCCGAGGC
TTCAGCCCGTCACGACCACCCCCAGCTCGACGCCGCCTATCGCGATCACGCCGGCTGGCTGGTCGCCTTCCTCCGCCGCC
GCTTCTCAGCCCGCGACGCCGAGGATCTCGCCCAGGAAACCTTCGTCCGCGCCGCCGGCGCCCAGGTCACCCTGCGCAAC
CCCCGCGGCTTCCTGGCCAGGGTCGCGCTGCGCGTCGTTCAGGACGACGCCCGCCGTCAGGCGGCGCGCCCGACCTTCGC
CCCGGAAGACGCCGCTCCAGATCCTGCGACCGACCCCGACCAGGCCGAGGCCGTTCTCCTCAAGGAGGTGGTGCTCTCGC
TCCCGCCGAAGCTGCGGGAGGTGTTCCTCTTGAGCCGCTTCCACGGCCTGACGTATGAAGAGATCGCACGTCGCTGCAAC
CTGTCCGTGAAAACGGTCGAGGCGCGGATGACCCGGGCTCTGGCGATGTGCGTGGCGCGTCTGCGGGACTAG

Upstream 100 bases:

>100_bases
GATGGTTGCGACCCCCTCGATCCCCATCTACACACTGACAGTGTGTATCTTCGGCTCCGGCCGGCGAGATCCACAGCTCT
CACTCGCCGAGCGCGTCCGA

Downstream 100 bases:

>100_bases
CGAATGAGCGAGCGAGCTGCGACCCCGAGCCGCCAGGAGCTGGAAGCGGCCGAATGGTTCGCGAAGCTCAACAAGCTCTC
CGTCACCACCGACGCGCTCC

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MRPNGQLAEPDHPFDDEGRPTAPAAEASARHDHPQLDAAYRDHAGWLVAFLRRRFSARDAEDLAQETFVRAAGAQVTLRN
PRGFLARVALRVVQDDARRQAARPTFAPEDAAPDPATDPDQAEAVLLKEVVLSLPPKLREVFLLSRFHGLTYEEIARRCN
LSVKTVEARMTRALAMCVARLRD

Sequences:

>Translated_183_residues
MRPNGQLAEPDHPFDDEGRPTAPAAEASARHDHPQLDAAYRDHAGWLVAFLRRRFSARDAEDLAQETFVRAAGAQVTLRN
PRGFLARVALRVVQDDARRQAARPTFAPEDAAPDPATDPDQAEAVLLKEVVLSLPPKLREVFLLSRFHGLTYEEIARRCN
LSVKTVEARMTRALAMCVARLRD
>Mature_183_residues
MRPNGQLAEPDHPFDDEGRPTAPAAEASARHDHPQLDAAYRDHAGWLVAFLRRRFSARDAEDLAQETFVRAAGAQVTLRN
PRGFLARVALRVVQDDARRQAARPTFAPEDAAPDPATDPDQAEAVLLKEVVLSLPPKLREVFLLSRFHGLTYEEIARRCN
LSVKTVEARMTRALAMCVARLRD

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=153, Percent_Identity=37.9084967320261, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20414; Mature: 20414

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPNGQLAEPDHPFDDEGRPTAPAAEASARHDHPQLDAAYRDHAGWLVAFLRRRFSARDA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
EDLAQETFVRAAGAQVTLRNPRGFLARVALRVVQDDARRQAARPTFAPEDAAPDPATDPD
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
QAEAVLLKEVVLSLPPKLREVFLLSRFHGLTYEEIARRCNLSVKTVEARMTRALAMCVAR
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LRD
HCC
>Mature Secondary Structure
MRPNGQLAEPDHPFDDEGRPTAPAAEASARHDHPQLDAAYRDHAGWLVAFLRRRFSARDA
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
EDLAQETFVRAAGAQVTLRNPRGFLARVALRVVQDDARRQAARPTFAPEDAAPDPATDPD
HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH
QAEAVLLKEVVLSLPPKLREVFLLSRFHGLTYEEIARRCNLSVKTVEARMTRALAMCVAR
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LRD
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]