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The map label for this gene is ydeM [C]

Identifier: 197105850

GI number: 197105850

Start: 2711862

End: 2713988

Strand: Reverse

Name: ydeM [C]

Synonym: PHZ_c2389

Alternate gene names: 197105850

Gene position: 2713988-2711862 (Counterclockwise)

Preceding gene: 197105851

Following gene: 197105849

Centisome position: 67.91

GC content: 68.45

Gene sequence:

>2127_bases
ATGACGCCCGCGAGGATCTCATCCTTCCTCGTCAAGGTGGCGTCCCGCTGCAACCTCGACTGCGACTACTGCTATGTCTA
TCACCACGCCGATCAGGCGTGGCGGTCGATGCCGCAGGTCCTGAGTGATGAGGACCGGCAGGCCTTCGCCCGGCGGCTGG
CGGAGTACGCGCGATCCATCGATCTGAAGCGGGCGGCCGTCATCTTCCACGGCGGCGAGCCCCTCCTGGCGGGCGCGGCG
TCGCTTTGCGCGTTCGCCCGTCTAATCCGTGAAACGGCGGGTCCTGACATCGACATCGATATCGGCCTGCAGACGAACGG
GCTGCTGCTGGACGACGAAGCGCTCGACCTCTTCGAGGCGCACGGCATTGGCGTCTCGCTCAGCCTTGATGGTCCGCGCG
CCGTAAACGACCTCCATCGAACCACGCGCCGGCGTCGCTCGAGCTTCGACAGGGTCGAAGCCGCCCTGGAACGGCTGAAG
CTCCGGCCGGGCGTCTTTGCGGGCGTGATCGCGGTGATCGATGCGAGCACCGACCCGGCCGAGCTCCTCGAGTACTTCGC
AGGTCACGCGCCGCCGCGCGTCGACTTTCTGCTGCCGGATGCGCACCATGGACGCCCGCCGCCGGGACGGAGTGCCGACG
AAGACCTTTACGTGCGCTGGCTGCTGCGGGCCTTCGACACCTGGCTCGATCACTATCCGTCATTGCCGGTGCGCAGTTTC
GAGGCGCTGCTCGACGCCATCATGGGCCTGCCGTCCGGAACTGACGCCTTCGGGTTCGGCGACGTCAGCCTCATCTCTGT
CGAGACCGATGGGACCTACCATGACCTCGATGTCCTGAAGGTGGTGGGCAACGGCACCCAGCTCGGAGGCGGCGTAAAGG
ACACCTCGATCGCCGAGGCGGCGAGTTCGGTGCGACTGGAAGACCATCGCCGCCTGCTGGCGCGATCCGGCCTCTGCGCG
ACGTGCCAGGAGTGCGCGGTCGTGGACATCTGTGGCGGCGGCGCCGTGCCACACCGCTGGAGCGAAGGCGGCTTCAGCAA
TCCCACAGTCTACTGCCGCGAGATGAAGGCGCTGATCGCGCACGCTCAGTCTCGCCTGAGTGAAGCTCTGGAAACGGAGG
CCGGCGAGCCCGAGCTCGACATCGACGTGGACGCCTTCGAGCTCGCTGAAACGGGCGAGGCGGTGATGGCGAACCTCCGC
GAGAACGCCAGCCGCGCGCACCGCGAGTCCCTGGACGCGGCGTTGCGTTACGTCGCCGGGCAGGGCGGCCCGGCCGGTCA
GACGGCGCTGCGCATCCTGACGCTGTCTGCCGAGCGTCTGGACAGCATCAGCTGGCAGCCGGGCGTGGTCGCGTGGAGCG
GCGTCACGCTCGCGGCGCGTGACGGGCGGACCGTCTGCGACGTGTCCGGGGCGCCCCTCAGCTTCGATCCGGACTATGTC
GACGATATCGAGCGACTGTGCAGGTCGCCGATCGAGACCCCGATCGTCGGCGCGGACGACCGCTGGCTGCGCCGGCCTTT
TGGGGATGCGATCGCCTTCGAGCCGGAAGAGGTCGCCGATGCCGCGCGACCGCTCGTGGAGGAGGCCCTTCGCATCCTGG
CGGCGTGGCGGCCGGCTCTGGGGCGGGAGATCGCGGCCACGAGCCCTGCGGTGCAGTTCATCCGTGATCCGACAGCGCAT
CCCGACAAGATCGTCTCGTTCAGCGATGACGCCGTGCCGGGCGCGCTCTTTGTCTCGGTCCGGCAGGGCGATGGCCTGAT
CGACGCCTATGACCTGGCCGACTCCCTGCTCCATGAGCATCGGCATCAGAAGCTCTATCTCTTCGAACGCCGGTTCCCCA
CCACGCTTCCGGGCGATCTCGTCGTCTCTCCCTGGCGCGAAGACCTGCGACCGGTCTCCGGTCTCTTTCACGCCATCTTC
GTCTTCGTGGAGCTGCGCCGCTTCTGGGAGCATGTCCTCGCCTCAGGGCCGCCTCGGATGCTCACGCGGGCCCGCAATCA
GCTGGCGGACACCGAGCGCAACCTGGCTCAGGCGTTCGCCACGCTGGAGCAGCGCCAGCTCACGGGCGCCGGCGAGGCCC
TGGCCGCCGTGCTCCGCTCGCGGCGCGCCGTGTCTCTGGCGGCCTGA

Upstream 100 bases:

>100_bases
AGCGGCTCCAGGGCCGCCTTCGCTCGGACGCTCAGGCCAGCGAAGTGATCACCAGCTACGACCGGATGCATCACCGTCAC
AACCGCTCGTAGGCTGAGCG

Downstream 100 bases:

>100_bases
GCGTGTGGCTGCCGCGGGACAGGCTGCCGGACGAGCCGCACGCCCGGCATGCACGCCTGCGAGACTACTTCTGCGACCGT
GACGCCGTGGCGACCCCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: AnSME; Cys-type sulfatase-activating enzyme [H]

Number of amino acids: Translated: 708; Mature: 707

Protein sequence:

>708_residues
MTPARISSFLVKVASRCNLDCDYCYVYHHADQAWRSMPQVLSDEDRQAFARRLAEYARSIDLKRAAVIFHGGEPLLAGAA
SLCAFARLIRETAGPDIDIDIGLQTNGLLLDDEALDLFEAHGIGVSLSLDGPRAVNDLHRTTRRRRSSFDRVEAALERLK
LRPGVFAGVIAVIDASTDPAELLEYFAGHAPPRVDFLLPDAHHGRPPPGRSADEDLYVRWLLRAFDTWLDHYPSLPVRSF
EALLDAIMGLPSGTDAFGFGDVSLISVETDGTYHDLDVLKVVGNGTQLGGGVKDTSIAEAASSVRLEDHRRLLARSGLCA
TCQECAVVDICGGGAVPHRWSEGGFSNPTVYCREMKALIAHAQSRLSEALETEAGEPELDIDVDAFELAETGEAVMANLR
ENASRAHRESLDAALRYVAGQGGPAGQTALRILTLSAERLDSISWQPGVVAWSGVTLAARDGRTVCDVSGAPLSFDPDYV
DDIERLCRSPIETPIVGADDRWLRRPFGDAIAFEPEEVADAARPLVEEALRILAAWRPALGREIAATSPAVQFIRDPTAH
PDKIVSFSDDAVPGALFVSVRQGDGLIDAYDLADSLLHEHRHQKLYLFERRFPTTLPGDLVVSPWREDLRPVSGLFHAIF
VFVELRRFWEHVLASGPPRMLTRARNQLADTERNLAQAFATLEQRQLTGAGEALAAVLRSRRAVSLAA

Sequences:

>Translated_708_residues
MTPARISSFLVKVASRCNLDCDYCYVYHHADQAWRSMPQVLSDEDRQAFARRLAEYARSIDLKRAAVIFHGGEPLLAGAA
SLCAFARLIRETAGPDIDIDIGLQTNGLLLDDEALDLFEAHGIGVSLSLDGPRAVNDLHRTTRRRRSSFDRVEAALERLK
LRPGVFAGVIAVIDASTDPAELLEYFAGHAPPRVDFLLPDAHHGRPPPGRSADEDLYVRWLLRAFDTWLDHYPSLPVRSF
EALLDAIMGLPSGTDAFGFGDVSLISVETDGTYHDLDVLKVVGNGTQLGGGVKDTSIAEAASSVRLEDHRRLLARSGLCA
TCQECAVVDICGGGAVPHRWSEGGFSNPTVYCREMKALIAHAQSRLSEALETEAGEPELDIDVDAFELAETGEAVMANLR
ENASRAHRESLDAALRYVAGQGGPAGQTALRILTLSAERLDSISWQPGVVAWSGVTLAARDGRTVCDVSGAPLSFDPDYV
DDIERLCRSPIETPIVGADDRWLRRPFGDAIAFEPEEVADAARPLVEEALRILAAWRPALGREIAATSPAVQFIRDPTAH
PDKIVSFSDDAVPGALFVSVRQGDGLIDAYDLADSLLHEHRHQKLYLFERRFPTTLPGDLVVSPWREDLRPVSGLFHAIF
VFVELRRFWEHVLASGPPRMLTRARNQLADTERNLAQAFATLEQRQLTGAGEALAAVLRSRRAVSLAA
>Mature_707_residues
TPARISSFLVKVASRCNLDCDYCYVYHHADQAWRSMPQVLSDEDRQAFARRLAEYARSIDLKRAAVIFHGGEPLLAGAAS
LCAFARLIRETAGPDIDIDIGLQTNGLLLDDEALDLFEAHGIGVSLSLDGPRAVNDLHRTTRRRRSSFDRVEAALERLKL
RPGVFAGVIAVIDASTDPAELLEYFAGHAPPRVDFLLPDAHHGRPPPGRSADEDLYVRWLLRAFDTWLDHYPSLPVRSFE
ALLDAIMGLPSGTDAFGFGDVSLISVETDGTYHDLDVLKVVGNGTQLGGGVKDTSIAEAASSVRLEDHRRLLARSGLCAT
CQECAVVDICGGGAVPHRWSEGGFSNPTVYCREMKALIAHAQSRLSEALETEAGEPELDIDVDAFELAETGEAVMANLRE
NASRAHRESLDAALRYVAGQGGPAGQTALRILTLSAERLDSISWQPGVVAWSGVTLAARDGRTVCDVSGAPLSFDPDYVD
DIERLCRSPIETPIVGADDRWLRRPFGDAIAFEPEEVADAARPLVEEALRILAAWRPALGREIAATSPAVQFIRDPTAHP
DKIVSFSDDAVPGALFVSVRQGDGLIDAYDLADSLLHEHRHQKLYLFERRFPTTLPGDLVVSPWREDLRPVSGLFHAIFV
FVELRRFWEHVLASGPPRMLTRARNQLADTERNLAQAFATLEQRQLTGAGEALAAVLRSRRAVSLAA

Specific function: Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine ('Cys-51' in the arylsulfatase CPF_0221) into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical c

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=371, Percent_Identity=23.7196765498652, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI48994973, Length=366, Percent_Identity=26.2295081967213, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 77374; Mature: 77243

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPARISSFLVKVASRCNLDCDYCYVYHHADQAWRSMPQVLSDEDRQAFARRLAEYARSI
CCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
DLKRAAVIFHGGEPLLAGAASLCAFARLIRETAGPDIDIDIGLQTNGLLLDDEALDLFEA
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHHHHHH
HGIGVSLSLDGPRAVNDLHRTTRRRRSSFDRVEAALERLKLRPGVFAGVIAVIDASTDPA
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHH
ELLEYFAGHAPPRVDFLLPDAHHGRPPPGRSADEDLYVRWLLRAFDTWLDHYPSLPVRSF
HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
EALLDAIMGLPSGTDAFGFGDVSLISVETDGTYHDLDVLKVVGNGTQLGGGVKDTSIAEA
HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
ASSVRLEDHRRLLARSGLCATCQECAVVDICGGGAVPHRWSEGGFSNPTVYCREMKALIA
HHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
HAQSRLSEALETEAGEPELDIDVDAFELAETGEAVMANLRENASRAHRESLDAALRYVAG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QGGPAGQTALRILTLSAERLDSISWQPGVVAWSGVTLAARDGRTVCDVSGAPLSFDPDYV
CCCCCHHHHHHHHHCCHHHHHCCCCCCCEEEECCEEEEECCCCEEEECCCCCCCCCCHHH
DDIERLCRSPIETPIVGADDRWLRRPFGDAIAFEPEEVADAARPLVEEALRILAAWRPAL
HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GREIAATSPAVQFIRDPTAHPDKIVSFSDDAVPGALFVSVRQGDGLIDAYDLADSLLHEH
CCHHHCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
RHQKLYLFERRFPTTLPGDLVVSPWREDLRPVSGLFHAIFVFVELRRFWEHVLASGPPRM
CCCEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LTRARNQLADTERNLAQAFATLEQRQLTGAGEALAAVLRSRRAVSLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
TPARISSFLVKVASRCNLDCDYCYVYHHADQAWRSMPQVLSDEDRQAFARRLAEYARSI
CHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
DLKRAAVIFHGGEPLLAGAASLCAFARLIRETAGPDIDIDIGLQTNGLLLDDEALDLFEA
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECCHHHHHHHH
HGIGVSLSLDGPRAVNDLHRTTRRRRSSFDRVEAALERLKLRPGVFAGVIAVIDASTDPA
CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEECCCCHH
ELLEYFAGHAPPRVDFLLPDAHHGRPPPGRSADEDLYVRWLLRAFDTWLDHYPSLPVRSF
HHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
EALLDAIMGLPSGTDAFGFGDVSLISVETDGTYHDLDVLKVVGNGTQLGGGVKDTSIAEA
HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
ASSVRLEDHRRLLARSGLCATCQECAVVDICGGGAVPHRWSEGGFSNPTVYCREMKALIA
HHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
HAQSRLSEALETEAGEPELDIDVDAFELAETGEAVMANLRENASRAHRESLDAALRYVAG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QGGPAGQTALRILTLSAERLDSISWQPGVVAWSGVTLAARDGRTVCDVSGAPLSFDPDYV
CCCCCHHHHHHHHHCCHHHHHCCCCCCCEEEECCEEEEECCCCEEEECCCCCCCCCCHHH
DDIERLCRSPIETPIVGADDRWLRRPFGDAIAFEPEEVADAARPLVEEALRILAAWRPAL
HHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GREIAATSPAVQFIRDPTAHPDKIVSFSDDAVPGALFVSVRQGDGLIDAYDLADSLLHEH
CCHHHCCCHHHHHHCCCCCCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
RHQKLYLFERRFPTTLPGDLVVSPWREDLRPVSGLFHAIFVFVELRRFWEHVLASGPPRM
CCCEEEEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LTRARNQLADTERNLAQAFATLEQRQLTGAGEALAAVLRSRRAVSLAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA