Click here to switch to the map view.

The map label for this gene is virD2 [H]

Identifier: 197105820

GI number: 197105820

Start: 2671514

End: 2672791

Strand: Reverse

Name: virD2 [H]

Synonym: PHZ_c2358

Alternate gene names: 197105820

Gene position: 2672791-2671514 (Counterclockwise)

Preceding gene: 197105821

Following gene: 197105807

Centisome position: 66.88

GC content: 68.7

Gene sequence:

>1278_bases
CTGGGTGGCGGGCCTTGTGTCGGCCCATGTTCGCGGACGGCCGACGTTCGCGGCCTCGGATCATGGGGCGCTCGCCGCCA
TCGCCGGAGAGATTCGGAGGATCGGCGTCAACGTGAACCAGATCGCCAGGGCGCTGAACACAGCGGTTCTGGAAGGCCGC
GTTCTGGACGCGGAGCTCACGTCGATCAGCGCATTGCAGAACGAATTGCGCGCTCACGTCTTCGGGCTGCGCGAGGCCTT
TGCGGGCAACCTCGCCTATTGGGACACGGCCTGGTGAGTGAGTTCAGGACCGTCCGCGGATTCGAGGAGGTCTGGCGGCC
GCCGGTGTCGGGGCGCGTCTGGACGAACTCGCGGTTCGTCGGCCCAGATGACGCCCGGACCCGGCTGGCGAGACTGGTCC
GTCGGACGCCCGAGGTCATGGTGAAGGTTACCGGTCGCACCCGTGACGGGACGCATCTGGCTGCGCACCTGACATACATC
ACCCGGCGCGGTGAGCTCGAGTCAGAGGGGCAGGACGGACCGCTCCCGGCCGGGAGAATCTCAGTCGCCGATCTGGCCGC
CGCCTGGGCCTTCGAGGCGGACCTGGATCCTCGCCGGCGCTCGAACACGCCGGTCAGTCTCTCGGTGATGCTGTCGATGC
CAGCCGGCGCTGACCCGTCGAAGGTGAGGGATGCGGCCCGGGGTTTTGCGCGCCGCGCCTTTGGTGACGAACACGACTAT
CTGCTCGTCCTGCACACGGATACGCCGCATCCACACGTGCATATCGCGGTTCAGGCGCTCGGTCGTTCAGGCGCGCACCT
CAATCCGAAAAAGGCGGATCTGGAGCTCTGGCGGCAGGTATTTGCGCGCGAGCTGCGCGAGCGGGGCATCGAGGCCGAGG
CGACGCCACGGCGCGCGAGAGGCGTCACCCGGAAGGCTGAACGCGGCCCGATCAGGAGACTGCTCGACCGGATGTCTGCT
CAGGGCGGCCCCATGCCGCGTGTGAGGGCCTCCGCCTGGCGCGACGCAGCTCGAGCCGCCTTCCAGGTCGAAGTCGCGCC
GGCCGTGTGGGAACGTCGGCTGGCCGAGAAACAGGTGCGGATTCGCGCTCTGTTGCTCGCCCAGGCAAGGCTGATGCAGG
TCGCAGGGCGTCCTGAGGACCAGGCGCTCGGCCGCGCTGTTGAGACCTTCGTGAACAGCATGCCGCGCCCCGACAGCCAG
CGTCTGGCGCTGGCGCGGGAGCTTCGTGCTCGAAGCGAGGAGCGGCTGGCGGGGAAGAGCCGTCAGCGGCGACGGTGA

Upstream 100 bases:

>100_bases
GACAGCCTCGCACCGGCGCTCGCCTGATGGTCCGTCTGACGCCAGCGGACGCGGCTCTGGTCGACCGGCAGTCTCACGAG
ATGGGCCTGCGGCGCGCGGC

Downstream 100 bases:

>100_bases
CGCTTGGAGCCAGATCTGGACGCCCGCCTGGCGTACTCAGGGACGCTGAGCGATCGCCGTATCAGCGTGGCCGCTCCCGG
GAAGGCGCGTTGCGACTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MGGGPCVGPCSRTADVRGLGSWGARRHRRRDSEDRRQREPDRQGAEHSGSGRPRSGRGAHVDQRIAERIARSRLRAARGL
CGQPRLLGHGLVSEFRTVRGFEEVWRPPVSGRVWTNSRFVGPDDARTRLARLVRRTPEVMVKVTGRTRDGTHLAAHLTYI
TRRGELESEGQDGPLPAGRISVADLAAAWAFEADLDPRRRSNTPVSLSVMLSMPAGADPSKVRDAARGFARRAFGDEHDY
LLVLHTDTPHPHVHIAVQALGRSGAHLNPKKADLELWRQVFARELRERGIEAEATPRRARGVTRKAERGPIRRLLDRMSA
QGGPMPRVRASAWRDAARAAFQVEVAPAVWERRLAEKQVRIRALLLAQARLMQVAGRPEDQALGRAVETFVNSMPRPDSQ
RLALARELRARSEERLAGKSRQRRR

Sequences:

>Translated_425_residues
MGGGPCVGPCSRTADVRGLGSWGARRHRRRDSEDRRQREPDRQGAEHSGSGRPRSGRGAHVDQRIAERIARSRLRAARGL
CGQPRLLGHGLVSEFRTVRGFEEVWRPPVSGRVWTNSRFVGPDDARTRLARLVRRTPEVMVKVTGRTRDGTHLAAHLTYI
TRRGELESEGQDGPLPAGRISVADLAAAWAFEADLDPRRRSNTPVSLSVMLSMPAGADPSKVRDAARGFARRAFGDEHDY
LLVLHTDTPHPHVHIAVQALGRSGAHLNPKKADLELWRQVFARELRERGIEAEATPRRARGVTRKAERGPIRRLLDRMSA
QGGPMPRVRASAWRDAARAAFQVEVAPAVWERRLAEKQVRIRALLLAQARLMQVAGRPEDQALGRAVETFVNSMPRPDSQ
RLALARELRARSEERLAGKSRQRRR
>Mature_424_residues
GGGPCVGPCSRTADVRGLGSWGARRHRRRDSEDRRQREPDRQGAEHSGSGRPRSGRGAHVDQRIAERIARSRLRAARGLC
GQPRLLGHGLVSEFRTVRGFEEVWRPPVSGRVWTNSRFVGPDDARTRLARLVRRTPEVMVKVTGRTRDGTHLAAHLTYIT
RRGELESEGQDGPLPAGRISVADLAAAWAFEADLDPRRRSNTPVSLSVMLSMPAGADPSKVRDAARGFARRAFGDEHDYL
LVLHTDTPHPHVHIAVQALGRSGAHLNPKKADLELWRQVFARELRERGIEAEATPRRARGVTRKAERGPIRRLLDRMSAQ
GGPMPRVRASAWRDAARAAFQVEVAPAVWERRLAEKQVRIRALLLAQARLMQVAGRPEDQALGRAVETFVNSMPRPDSQR
LALARELRARSEERLAGKSRQRRR

Specific function: Tumor formation by A.tumefaciens involves the transfer and integration of a defined segment (T-DNA) of Ti plasmid DNA into the plant nuclear genome. The virD operon encodes a site- specific endonuclease that cleaves at a unique site within both 24 bp dire

COG id: COG3843

COG function: function code U; Type IV secretory pathway, VirD2 components (relaxase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005094
- InterPro:   IPR016644 [H]

Pfam domain/function: PF03432 Relaxase [H]

EC number: NA

Molecular weight: Translated: 47490; Mature: 47359

Theoretical pI: Translated: 12.11; Mature: 12.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGGPCVGPCSRTADVRGLGSWGARRHRRRDSEDRRQREPDRQGAEHSGSGRPRSGRGAH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VDQRIAERIARSRLRAARGLCGQPRLLGHGLVSEFRTVRGFEEVWRPPVSGRVWTNSRFV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCEEECCCCCC
GPDDARTRLARLVRRTPEVMVKVTGRTRDGTHLAAHLTYITRRGELESEGQDGPLPAGRI
CCCHHHHHHHHHHHCCCHHEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SVADLAAAWAFEADLDPRRRSNTPVSLSVMLSMPAGADPSKVRDAARGFARRAFGDEHDY
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCE
LLVLHTDTPHPHVHIAVQALGRSGAHLNPKKADLELWRQVFARELRERGIEAEATPRRAR
EEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GVTRKAERGPIRRLLDRMSAQGGPMPRVRASAWRDAARAAFQVEVAPAVWERRLAEKQVR
CCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHH
IRALLLAQARLMQVAGRPEDQALGRAVETFVNSMPRPDSQRLALARELRARSEERLAGKS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCH
RQRRR
HHCCC
>Mature Secondary Structure 
GGGPCVGPCSRTADVRGLGSWGARRHRRRDSEDRRQREPDRQGAEHSGSGRPRSGRGAH
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
VDQRIAERIARSRLRAARGLCGQPRLLGHGLVSEFRTVRGFEEVWRPPVSGRVWTNSRFV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCEEECCCCCC
GPDDARTRLARLVRRTPEVMVKVTGRTRDGTHLAAHLTYITRRGELESEGQDGPLPAGRI
CCCHHHHHHHHHHHCCCHHEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SVADLAAAWAFEADLDPRRRSNTPVSLSVMLSMPAGADPSKVRDAARGFARRAFGDEHDY
HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCE
LLVLHTDTPHPHVHIAVQALGRSGAHLNPKKADLELWRQVFARELRERGIEAEATPRRAR
EEEEECCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GVTRKAERGPIRRLLDRMSAQGGPMPRVRASAWRDAARAAFQVEVAPAVWERRLAEKQVR
CCCHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHH
IRALLLAQARLMQVAGRPEDQALGRAVETFVNSMPRPDSQRLALARELRARSEERLAGKS
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCH
RQRRR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3021341; 2822660 [H]