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The map label for this gene is virB1 [H]

Identifier: 197105809

GI number: 197105809

Start: 2659903

End: 2660520

Strand: Direct

Name: virB1 [H]

Synonym: PHZ_c2347

Alternate gene names: 197105809

Gene position: 2659903-2660520 (Clockwise)

Preceding gene: 197105808

Following gene: 197105810

Centisome position: 66.56

GC content: 69.9

Gene sequence:

>618_bases
ATGCCGCTCGATCTCGCCACCCTTCTGCCGCTCGCAAGCCAGTGCGCGCCCGCCGTCGCGCCATCGACGCTGCTGGCGAT
CGCAAAGGCCGAAAGCGCCTTCGATCCGCTGGCGATCGGCGTCAATGGAGCTGGCGGCGGCGCCCTTCGGCCGCGCTCGG
CGGAAGAGGCGGCTGCAGTCGCCCGGCGCCTGATTGCGAACGGCCGCAGCATCGATCTCGGCCTGGGGCAGATCAATTCC
CGAAACCTCAGCCGACTTGGCCTGACCGTCGAAGCCGCCTTCGATCCCTGCCGTAACCTGGCCGCGTCGGCGACGGTGCT
CTCCGAAGGGTTCGACCGCGCCACGAAAGTCGCGCCCGGCGAACAGGCGGCGCTGCGCATGGCGCTGTCGATCTACAACA
CCGGCCACCCAGAGCGCGGCCTGCGAAACGGCTATGTGACCCGCGTCACCCGCGCCGCCGCCAGCCTCGTCCCAGCGCTG
CGGACACATGCGGCCGCGAATGTCTCGCCGCCTTCTGCATCTCCCCCCGCGGCGGCCCCGACGTGGGACGTGTTCGCACG
CGCCCGGATCAGGTCCGGCGGCTTTGTGCTCACCCCCTCTTCTGGAGATCTCAGATGA

Upstream 100 bases:

>100_bases
GCAGCTTCGCACGAAGATCTACCTGCTCGCGCAAGTAGGCGTACGCATCGTCCGAGCGATGGCGCTCCGGCATCAAGGGG
ACCTGAAGACAGGGACCGCC

Downstream 100 bases:

>100_bases
CTTTCGCCCGCCGGCGCCTGGCGCTCGCCGCCCTGCTTGCGCTCAGCGCCTCCCCCGCCTTCGCTCAATCCACCAGCGTC
GGGGGCGATCTCGGCGGCTT

Product: conjugal transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MPLDLATLLPLASQCAPAVAPSTLLAIAKAESAFDPLAIGVNGAGGGALRPRSAEEAAAVARRLIANGRSIDLGLGQINS
RNLSRLGLTVEAAFDPCRNLAASATVLSEGFDRATKVAPGEQAALRMALSIYNTGHPERGLRNGYVTRVTRAAASLVPAL
RTHAAANVSPPSASPPAAAPTWDVFARARIRSGGFVLTPSSGDLR

Sequences:

>Translated_205_residues
MPLDLATLLPLASQCAPAVAPSTLLAIAKAESAFDPLAIGVNGAGGGALRPRSAEEAAAVARRLIANGRSIDLGLGQINS
RNLSRLGLTVEAAFDPCRNLAASATVLSEGFDRATKVAPGEQAALRMALSIYNTGHPERGLRNGYVTRVTRAAASLVPAL
RTHAAANVSPPSASPPAAAPTWDVFARARIRSGGFVLTPSSGDLR
>Mature_204_residues
PLDLATLLPLASQCAPAVAPSTLLAIAKAESAFDPLAIGVNGAGGGALRPRSAEEAAAVARRLIANGRSIDLGLGQINSR
NLSRLGLTVEAAFDPCRNLAASATVLSEGFDRATKVAPGEQAALRMALSIYNTGHPERGLRNGYVTRVTRAAASLVPALR
THAAANVSPPSASPPAAAPTWDVFARARIRSGGFVLTPSSGDLR

Specific function: VirB proteins are suggested to act at the bacterial surface and there play an important role in directing T-DNA transfer to plant cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virb1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 20968; Mature: 20837

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLDLATLLPLASQCAPAVAPSTLLAIAKAESAFDPLAIGVNGAGGGALRPRSAEEAAAV
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHH
ARRLIANGRSIDLGLGQINSRNLSRLGLTVEAAFDPCRNLAASATVLSEGFDRATKVAPG
HHHHHHCCCEEEEECCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EQAALRMALSIYNTGHPERGLRNGYVTRVTRAAASLVPALRTHAAANVSPPSASPPAAAP
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TWDVFARARIRSGGFVLTPSSGDLR
HHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure 
PLDLATLLPLASQCAPAVAPSTLLAIAKAESAFDPLAIGVNGAGGGALRPRSAEEAAAV
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHH
ARRLIANGRSIDLGLGQINSRNLSRLGLTVEAAFDPCRNLAASATVLSEGFDRATKVAPG
HHHHHHCCCEEEEECCCCCCCCHHHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EQAALRMALSIYNTGHPERGLRNGYVTRVTRAAASLVPALRTHAAANVSPPSASPPAAAP
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
TWDVFARARIRSGGFVLTPSSGDLR
HHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2837739 [H]