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The map label for this gene is yngJ [H]

Identifier: 197105797

GI number: 197105797

Start: 2648536

End: 2649678

Strand: Reverse

Name: yngJ [H]

Synonym: PHZ_c2335

Alternate gene names: 197105797

Gene position: 2649678-2648536 (Counterclockwise)

Preceding gene: 197105798

Following gene: 197105796

Centisome position: 66.3

GC content: 68.33

Gene sequence:

>1143_bases
GTGGATTTCAGCTTCACCGAAGAACAGTCGATGCTGCGCGACACGGTCGCGAGCTACCTGGCCGACAACTACGACTTCGA
CAAGCGCCGGGCGGCGCTCGCCAAGGCGCCGCACTGGCGTCCCGACGTCTGGAAGGCCTTCGCCGAGGAGCTGGGCATCC
TGGGGGCGCCGTTCTCGGAGGAGCTGGGCGGCCTGGGCGGCGGCCCGATCGAGAACATGGTGGTGATGGAAGAGCTGGGT
AAGGCGCTGGTCGTCGAGCCCTACCTGCCCACGGTGGTGATCGGCGGCGGCTTCCTGAAGCACTCGGGCCACGCCGGCGC
GGCCGACCTGATCGGCGGCATCATCGGCGGCACGAACATCTTCGCCTTCGCCTACGCCGAGCCGCAGGGGCGCTACAACA
TGGCCGACCTGACGACCACGGCGAAGAAGGACGGCGCGGGCTACGTGCTGAACGGCCACAAGGCGGTGGTGATCGGCGGC
CCGTACGCCACCCACTTCATCGTCACGGCGCGCACCTCGGGCGGCCAGCGCGACGCGCAGGGCGTGTCGGTGTTCCTGGT
CGAGCGCGGCGCGGCCGGCGTCTCGACCCGCGACTACCCGACCGTCGACGGCTTCATGGCCTCGGAGGTCTACTTCGAGA
ACGTCTCGCTGGGCGCCGACGCCCTGATCGGACCGGCCGACCACGGCCTTCCGCTGGTCGAGAAGGTGGTGGACGAGGCC
ATCGCCGCCACCTGCGCCGAGGCCTGCGGCGTGCTGCGCCGCCTGCAGGAAGGCACCGTCGAGTACACCAAGCAGCGCAA
GCAGTTCGGCGTGCCGATCAGCTCGTTCCAGGTGCTGCAGCACCGGATGGTCGACATGTTCATCAACCTCGAGCAGTCGA
TCTCGATGACCTACATGGCCAACATCAAGCTGGCTGACGACGCCGAGCGGGCCAAGGCGGTTTCGGCCGCGAAGGTCCAG
ATCGGCAAGGCCTGCAAGTTCGTGGGCGAGCAGGCCATCCAGCTGCACGGCGGCATGGGCATGACCGACGAGATGGCCAT
CGGCCACTACTTCAAGCGCGCGACGATGATCCAGAGCGCGTTCGGCTCGGTCGACCACCACCTGGCCCGCTACGAGTCCC
TGAGCCTCGGCCAGGCGGCCTAA

Upstream 100 bases:

>100_bases
CTCGAACGAGATCCAGCGCAACATCATCGCCAAGATGGTGCTGGGCCTCTAAGCGCCTAAGATATTCACAGATTAGAAGA
TTTAAGACGGAGCAAGCGCC

Downstream 100 bases:

>100_bases
GGGGCGATGACGGGTGGAGGGGCCGTCCTCCACCCGTTCGTCCCGGTGACGCCCGGGATTCTCTGACCGCCATTGCCCGC
CGCCCCGGGGCGGCCTAACC

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDFSFTEEQSMLRDTVASYLADNYDFDKRRAALAKAPHWRPDVWKAFAEELGILGAPFSEELGGLGGGPIENMVVMEELG
KALVVEPYLPTVVIGGGFLKHSGHAGAADLIGGIIGGTNIFAFAYAEPQGRYNMADLTTTAKKDGAGYVLNGHKAVVIGG
PYATHFIVTARTSGGQRDAQGVSVFLVERGAAGVSTRDYPTVDGFMASEVYFENVSLGADALIGPADHGLPLVEKVVDEA
IAATCAEACGVLRRLQEGTVEYTKQRKQFGVPISSFQVLQHRMVDMFINLEQSISMTYMANIKLADDAERAKAVSAAKVQ
IGKACKFVGEQAIQLHGGMGMTDEMAIGHYFKRATMIQSAFGSVDHHLARYESLSLGQAA

Sequences:

>Translated_380_residues
MDFSFTEEQSMLRDTVASYLADNYDFDKRRAALAKAPHWRPDVWKAFAEELGILGAPFSEELGGLGGGPIENMVVMEELG
KALVVEPYLPTVVIGGGFLKHSGHAGAADLIGGIIGGTNIFAFAYAEPQGRYNMADLTTTAKKDGAGYVLNGHKAVVIGG
PYATHFIVTARTSGGQRDAQGVSVFLVERGAAGVSTRDYPTVDGFMASEVYFENVSLGADALIGPADHGLPLVEKVVDEA
IAATCAEACGVLRRLQEGTVEYTKQRKQFGVPISSFQVLQHRMVDMFINLEQSISMTYMANIKLADDAERAKAVSAAKVQ
IGKACKFVGEQAIQLHGGMGMTDEMAIGHYFKRATMIQSAFGSVDHHLARYESLSLGQAA
>Mature_380_residues
MDFSFTEEQSMLRDTVASYLADNYDFDKRRAALAKAPHWRPDVWKAFAEELGILGAPFSEELGGLGGGPIENMVVMEELG
KALVVEPYLPTVVIGGGFLKHSGHAGAADLIGGIIGGTNIFAFAYAEPQGRYNMADLTTTAKKDGAGYVLNGHKAVVIGG
PYATHFIVTARTSGGQRDAQGVSVFLVERGAAGVSTRDYPTVDGFMASEVYFENVSLGADALIGPADHGLPLVEKVVDEA
IAATCAEACGVLRRLQEGTVEYTKQRKQFGVPISSFQVLQHRMVDMFINLEQSISMTYMANIKLADDAERAKAVSAAKVQ
IGKACKFVGEQAIQLHGGMGMTDEMAIGHYFKRATMIQSAFGSVDHHLARYESLSLGQAA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=370, Percent_Identity=25.6756756756757, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI4557233, Length=314, Percent_Identity=26.1146496815287, Blast_Score=115, Evalue=9e-26,
Organism=Homo sapiens, GI4501857, Length=369, Percent_Identity=26.0162601626016, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI226958414, Length=333, Percent_Identity=27.027027027027, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI4501859, Length=362, Percent_Identity=25.1381215469613, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI7656849, Length=328, Percent_Identity=26.8292682926829, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI21361497, Length=351, Percent_Identity=25.9259259259259, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI76496475, Length=330, Percent_Identity=25.7575757575758, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI4557235, Length=330, Percent_Identity=25.7575757575758, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4557231, Length=376, Percent_Identity=22.0744680851064, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI187960098, Length=376, Percent_Identity=22.0744680851064, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI87081958, Length=372, Percent_Identity=25.5376344086022, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786223, Length=388, Percent_Identity=24.2268041237113, Blast_Score=81, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17538396, Length=377, Percent_Identity=25.4641909814324, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17570075, Length=380, Percent_Identity=26.5789473684211, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI71985184, Length=249, Percent_Identity=28.1124497991968, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17569725, Length=328, Percent_Identity=24.0853658536585, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17534899, Length=320, Percent_Identity=25.3125, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17506239, Length=362, Percent_Identity=24.3093922651934, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=315, Percent_Identity=24.1269841269841, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17533517, Length=311, Percent_Identity=24.1157556270096, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71985192, Length=215, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71990804, Length=263, Percent_Identity=24.7148288973384, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32563615, Length=236, Percent_Identity=26.271186440678, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17551932, Length=242, Percent_Identity=23.5537190082645, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17505929, Length=242, Percent_Identity=23.9669421487603, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17534353, Length=391, Percent_Identity=23.2736572890026, Blast_Score=68, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21356377, Length=357, Percent_Identity=25.4901960784314, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24666513, Length=365, Percent_Identity=26.3013698630137, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21355753, Length=388, Percent_Identity=25.7731958762887, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646207, Length=320, Percent_Identity=25.625, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24660351, Length=368, Percent_Identity=23.3695652173913, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI281363737, Length=233, Percent_Identity=27.8969957081545, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40697; Mature: 40697

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFSFTEEQSMLRDTVASYLADNYDFDKRRAALAKAPHWRPDVWKAFAEELGILGAPFSE
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHH
ELGGLGGGPIENMVVMEELGKALVVEPYLPTVVIGGGFLKHSGHAGAADLIGGIIGGTNI
HHCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCEECCCCCCHHHHHHHHHCCCEE
FAFAYAEPQGRYNMADLTTTAKKDGAGYVLNGHKAVVIGGPYATHFIVTARTSGGQRDAQ
EEEEEECCCCCEEHHHHHHHHCCCCCCEEEECCEEEEECCCCEEEEEEEEECCCCCCCCC
GVSVFLVERGAAGVSTRDYPTVDGFMASEVYFENVSLGADALIGPADHGLPLVEKVVDEA
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCEECCCCCCCHHHHHHHHHH
IAATCAEACGVLRRLQEGTVEYTKQRKQFGVPISSFQVLQHRMVDMFINLEQSISMTYMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEE
NIKLADDAERAKAVSAAKVQIGKACKFVGEQAIQLHGGMGMTDEMAIGHYFKRATMIQSA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FGSVDHHLARYESLSLGQAA
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDFSFTEEQSMLRDTVASYLADNYDFDKRRAALAKAPHWRPDVWKAFAEELGILGAPFSE
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHH
ELGGLGGGPIENMVVMEELGKALVVEPYLPTVVIGGGFLKHSGHAGAADLIGGIIGGTNI
HHCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCEECCCCCCHHHHHHHHHCCCEE
FAFAYAEPQGRYNMADLTTTAKKDGAGYVLNGHKAVVIGGPYATHFIVTARTSGGQRDAQ
EEEEEECCCCCEEHHHHHHHHCCCCCCEEEECCEEEEECCCCEEEEEEEEECCCCCCCCC
GVSVFLVERGAAGVSTRDYPTVDGFMASEVYFENVSLGADALIGPADHGLPLVEKVVDEA
CEEEEEEECCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCEECCCCCCCHHHHHHHHHH
IAATCAEACGVLRRLQEGTVEYTKQRKQFGVPISSFQVLQHRMVDMFINLEQSISMTYMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEE
NIKLADDAERAKAVSAAKVQIGKACKFVGEQAIQLHGGMGMTDEMAIGHYFKRATMIQSA
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FGSVDHHLARYESLSLGQAA
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]