Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

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The map label for this gene is 197105756

Identifier: 197105756

GI number: 197105756

Start: 2599157

End: 2600818

Strand: Reverse

Name: 197105756

Synonym: PHZ_c2294

Alternate gene names: NA

Gene position: 2600818-2599157 (Counterclockwise)

Preceding gene: 197105757

Following gene: 197105755

Centisome position: 65.08

GC content: 74.37

Gene sequence:

>1662_bases
GTGGAGAATAGCCGTCTTGCGGCATGGCTGGGTCTTCCCCGCAGCCTTCCGGTCCTGGTGTTGGTCATCGGCCTCATCGC
CAGCCTGGCGGCCGGCCTGCAGGTCCAGCGGGTCGCCGAGGCCAAGGACCGCGAGCGCTTCAACAACGCCGTCGCACAGG
CGCACGCGGCGGTGGCGGCCCGGCTGCAGACCTATACGGCCGCCCTTCGCGGCGGGACCGGGCTGTTCGCCGCCCGCCCC
GGCGGGGCGGTGACGCGCGAGGAGTTCCGCGCCTACGCCGAGCGGCTGGACCTGCCGCAGGTCTATCCGGGCATCCAGGG
GCTGGGGTTCAGCGCCAAGCTGCCGGGCCTGGCGGGCCCCGAAACCGCGGCGATGCTGGCGCGCCACGGCGTGCCCGGCC
TGGAGATCCATCCCTCCCACCCGCGGCCGGAAGTCCACGCCATCCTGTTCCTGGAGCCCTTGGACCGGCGCAACCGCGCG
GCCCTGGGCTACGACATGTATTCCAACGCGGTGCGCCGGGCCGCCATGGCCGCCGCCCGGGACACCGGCCGCGGGGCGAT
GTCGGGCAAGGTGGAGCTGGTCCAGGAGATCGATCGGGACAAGCAGGCCGGCTTCCTGATCTACCACCCGGTCTATCGCG
ACGGGGGCGTGCCCGAGACGGTCGCGCAGCGGCGGGCCCAGCTGATCGGCTTCGTCTACGCCCCGTTCCGGGCGGACGAC
CTGCTGCGCGGCATCTTCGGCGACCAGCCCAATCCCCGCGTCCGGATGTTCGTCTACGACGAGACGGTCGCGCCCGAGAA
CCTGCTGCACGCCTCGACCGGCCGGGCGCCCGATCCCGCGCGGTTCACGGCGAGCCGCGACCTCGAGATCGGCGGGCGGC
GCTGGCGGATCGTCTACGCCGCAGCGCCGGGCCTGGAGGAGGGCTCCACCCGCGGCCTGGCGTTCGTCTTCTTCGTCGGC
GGCATGCTGGCGACGGGCCTGGTGGCCTTCGCGACCTGGCGGCAGGTGCGGGCGCGCCTGACGGCCGAGGACGAGATCGC
GGCCCGGCGGGAGGCCGAGCACGAGCGAGAGCTGCTGGTGGCCGAGCTGAACCACCGGGTGAAGAACACCCTGGCGACCG
TCCAGTCGATCGCCGCCCAGAGCCTGCGCGAGGGTCGCTCGGCCGCGGAGACGCGCGAGACCTTCGAGGCCCGGCTGCTG
GCGCTCAGCCACACCCACAACCTCCTGACCCGCGCCCACTGGCGGGGCGCGGACCTGCGGGAGATCGTCCGGCAGGAGCT
GTCCCCCCACGGCGAGGGGCGGGTGCGGATCGACGGCGGGCCGGTCTCGCTGCCGCCAGCCGCCTCGCTGGCCGTGGGCA
TGGCCCTGCACGAGCTGGCCACCAACGCGGCCAAGTACGGCGCGCTGAGCCGGCCGGAGGGGCAGGTGGCCGTCGCCTGG
CAGGTGATCGGGCGGGCCGAGGCGCGGCGCGTCCGGCTTACCTGGCGGGAGATCGGCGGGCCGCCGGTCGCCGAGGCGCC
GCGGCGGCGCGGCTTTGGCACCCGCCTGATCACCCAGGGGCTGAAGCAGCAGCTGGAGGGCGAGGTCGAGATGGACTTCC
GCTCCTCGGGGCTCGTCTGCGTGCTGGAGTTTCCGCTCAGGGCCCCCGCCGAGGCGGCCTGA

Upstream 100 bases:

>100_bases
AGGTTGATGAGATCGGCCATGGCTCCATCCTCCGCCATCGGCGTTGAAGCTATGCGAGCAGGGTTCGGGAAGCCAGACGG
GAGCGGCGTTGCCTGAGGGC

Downstream 100 bases:

>100_bases
AACCGCCTTCGCTCACGCCCGTTGCAGCCCTGCCGACAGGGCGGCGCAAGGGAAATGGAGCGAGCGCATGGTTCAACCTT
CCGAGATCGTCCAGCACATG

Product: sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MENSRLAAWLGLPRSLPVLVLVIGLIASLAAGLQVQRVAEAKDRERFNNAVAQAHAAVAARLQTYTAALRGGTGLFAARP
GGAVTREEFRAYAERLDLPQVYPGIQGLGFSAKLPGLAGPETAAMLARHGVPGLEIHPSHPRPEVHAILFLEPLDRRNRA
ALGYDMYSNAVRRAAMAAARDTGRGAMSGKVELVQEIDRDKQAGFLIYHPVYRDGGVPETVAQRRAQLIGFVYAPFRADD
LLRGIFGDQPNPRVRMFVYDETVAPENLLHASTGRAPDPARFTASRDLEIGGRRWRIVYAAAPGLEEGSTRGLAFVFFVG
GMLATGLVAFATWRQVRARLTAEDEIAARREAEHERELLVAELNHRVKNTLATVQSIAAQSLREGRSAAETRETFEARLL
ALSHTHNLLTRAHWRGADLREIVRQELSPHGEGRVRIDGGPVSLPPAASLAVGMALHELATNAAKYGALSRPEGQVAVAW
QVIGRAEARRVRLTWREIGGPPVAEAPRRRGFGTRLITQGLKQQLEGEVEMDFRSSGLVCVLEFPLRAPAEAA

Sequences:

>Translated_553_residues
MENSRLAAWLGLPRSLPVLVLVIGLIASLAAGLQVQRVAEAKDRERFNNAVAQAHAAVAARLQTYTAALRGGTGLFAARP
GGAVTREEFRAYAERLDLPQVYPGIQGLGFSAKLPGLAGPETAAMLARHGVPGLEIHPSHPRPEVHAILFLEPLDRRNRA
ALGYDMYSNAVRRAAMAAARDTGRGAMSGKVELVQEIDRDKQAGFLIYHPVYRDGGVPETVAQRRAQLIGFVYAPFRADD
LLRGIFGDQPNPRVRMFVYDETVAPENLLHASTGRAPDPARFTASRDLEIGGRRWRIVYAAAPGLEEGSTRGLAFVFFVG
GMLATGLVAFATWRQVRARLTAEDEIAARREAEHERELLVAELNHRVKNTLATVQSIAAQSLREGRSAAETRETFEARLL
ALSHTHNLLTRAHWRGADLREIVRQELSPHGEGRVRIDGGPVSLPPAASLAVGMALHELATNAAKYGALSRPEGQVAVAW
QVIGRAEARRVRLTWREIGGPPVAEAPRRRGFGTRLITQGLKQQLEGEVEMDFRSSGLVCVLEFPLRAPAEAA
>Mature_553_residues
MENSRLAAWLGLPRSLPVLVLVIGLIASLAAGLQVQRVAEAKDRERFNNAVAQAHAAVAARLQTYTAALRGGTGLFAARP
GGAVTREEFRAYAERLDLPQVYPGIQGLGFSAKLPGLAGPETAAMLARHGVPGLEIHPSHPRPEVHAILFLEPLDRRNRA
ALGYDMYSNAVRRAAMAAARDTGRGAMSGKVELVQEIDRDKQAGFLIYHPVYRDGGVPETVAQRRAQLIGFVYAPFRADD
LLRGIFGDQPNPRVRMFVYDETVAPENLLHASTGRAPDPARFTASRDLEIGGRRWRIVYAAAPGLEEGSTRGLAFVFFVG
GMLATGLVAFATWRQVRARLTAEDEIAARREAEHERELLVAELNHRVKNTLATVQSIAAQSLREGRSAAETRETFEARLL
ALSHTHNLLTRAHWRGADLREIVRQELSPHGEGRVRIDGGPVSLPPAASLAVGMALHELATNAAKYGALSRPEGQVAVAW
QVIGRAEARRVRLTWREIGGPPVAEAPRRRGFGTRLITQGLKQQLEGEVEMDFRSSGLVCVLEFPLRAPAEAA

Specific function: Photosensitive kinase that is involved in increased bacterial virulence upon exposure to light [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR013655
- InterPro:   IPR011102 [H]

Pfam domain/function: PF07536 HWE_HK; PF00989 PAS; PF08447 PAS_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 60229; Mature: 60229

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS50839 CHASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSRLAAWLGLPRSLPVLVLVIGLIASLAAGLQVQRVAEAKDRERFNNAVAQAHAAVAA
CCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLQTYTAALRGGTGLFAARPGGAVTREEFRAYAERLDLPQVYPGIQGLGFSAKLPGLAGP
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC
ETAAMLARHGVPGLEIHPSHPRPEVHAILFLEPLDRRNRAALGYDMYSNAVRRAAMAAAR
HHHHHHHHCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHH
DTGRGAMSGKVELVQEIDRDKQAGFLIYHPVYRDGGVPETVAQRRAQLIGFVYAPFRADD
CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCCHHH
LLRGIFGDQPNPRVRMFVYDETVAPENLLHASTGRAPDPARFTASRDLEIGGRRWRIVYA
HHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCEEEEEEE
AAPGLEEGSTRGLAFVFFVGGMLATGLVAFATWRQVRARLTAEDEIAARREAEHERELLV
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AELNHRVKNTLATVQSIAAQSLREGRSAAETRETFEARLLALSHTHNLLTRAHWRGADLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
EIVRQELSPHGEGRVRIDGGPVSLPPAASLAVGMALHELATNAAKYGALSRPEGQVAVAW
HHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEH
QVIGRAEARRVRLTWREIGGPPVAEAPRRRGFGTRLITQGLKQQLEGEVEMDFRSSGLVC
HHHCCHHHHEEEEEHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCEE
VLEFPLRAPAEAA
EEECCCCCCCCCC
>Mature Secondary Structure
MENSRLAAWLGLPRSLPVLVLVIGLIASLAAGLQVQRVAEAKDRERFNNAVAQAHAAVAA
CCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLQTYTAALRGGTGLFAARPGGAVTREEFRAYAERLDLPQVYPGIQGLGFSAKLPGLAGP
HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCC
ETAAMLARHGVPGLEIHPSHPRPEVHAILFLEPLDRRNRAALGYDMYSNAVRRAAMAAAR
HHHHHHHHCCCCCCEECCCCCCCCEEEEEEECCCCCCCCCEECHHHHHHHHHHHHHHHHH
DTGRGAMSGKVELVQEIDRDKQAGFLIYHPVYRDGGVPETVAQRRAQLIGFVYAPFRADD
CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHEECCCCHHH
LLRGIFGDQPNPRVRMFVYDETVAPENLLHASTGRAPDPARFTASRDLEIGGRRWRIVYA
HHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCEECCCEEEEEEE
AAPGLEEGSTRGLAFVFFVGGMLATGLVAFATWRQVRARLTAEDEIAARREAEHERELLV
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AELNHRVKNTLATVQSIAAQSLREGRSAAETRETFEARLLALSHTHNLLTRAHWRGADLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
EIVRQELSPHGEGRVRIDGGPVSLPPAASLAVGMALHELATNAAKYGALSRPEGQVAVAW
HHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEH
QVIGRAEARRVRLTWREIGGPPVAEAPRRRGFGTRLITQGLKQQLEGEVEMDFRSSGLVC
HHHCCHHHHEEEEEHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCEE
VLEFPLRAPAEAA
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA