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The map label for this gene is bphB [H]

Identifier: 197105723

GI number: 197105723

Start: 2562162

End: 2564402

Strand: Reverse

Name: bphB [H]

Synonym: PHZ_c2261

Alternate gene names: 197105723

Gene position: 2564402-2562162 (Counterclockwise)

Preceding gene: 197105724

Following gene: 197105722

Centisome position: 64.17

GC content: 71.0

Gene sequence:

>2241_bases
ATGAACGACGTCACCCTAGACCCGACCCTCGACCTGGACGCCTGCGCGGCCGAGCCGATCCGGATCCCGGGCGGTATCCA
GCCGCACGGCGCCTTGCTGGTGCTCTCGCCCGAAGGCTTCGAGGTGCTGCAGGCGAGCGAGAACCTCGCGGCGGTGACGG
GCCTTGCCGCCGAGTCCGGCCGGCCGCTGGCCGACCTGCCGGAAGCGGCGAGCCTCGTGGCGGAACTCGAGCGCTGGCTC
GCGGCCGGCGACAGCCTGCTGCTGCGTGCGCTGCGGATCGGCGAGGCGACCTTCCAGATCTCGGCGCACCGCACCGCCCA
GGGCCTGCTCGTCGAGTTCGAGCCGCCGGCGTCCGAGGCCGAGACCCTCGACGCCCTCTATCCGCGGCTCGGCCGGTTCC
TCGACGGCATCGCGCAGGCCGAGGGCGTGGGCGAGGTCGCGCAGATCGCCGTCCGCGAGATCCGGGCGCTCACCGGCTTC
AACCGGGTCCTGCTCTACAGCTTCGACTCCGAGGGCACCGGCACGGTGCTGGCCGAGGACGGCGACGGCGTCCTGCCTTC
GTACCTGAACCTGCGCTTCCCCGGTTCGGACATCCCGGCCCAGGCGCGCGAACTCTACAAGCTCAACCGTATCCGCCTGA
TCCCGACGGCCGACTACGCGCCGGCGGCGATCGTCCCGCCGCTGTCGCCCGTGGATGGACAGCCGCTGGACCTGAGCCTG
GCGGCCCTGCGCAGCGTCTCGCCGGTTCACCTGCAGTACATGCGCAACATGGGCACAGGCGCGTCCATGTCGGTGTCGAT
CCTGGTGAAGGGCGAGCTCTGGGGCCTGATCTCGGGCCACAGCCGCGAACCGCGGCACGTGAACGCGCAGGTGCGCACCG
CCTGCGACATCCTGGGCCAGATCCTCTCGCTGCAGATCGAGGCGCGGGAACAGGCGCAGCGGACCGCCGAGCGGCTGGCC
CTCAAGGACGTGGAGACGGCCCTCATCGCGCGGGTCTCGGCGGCGCAGAGCTACCAGGACGGCCTGGCCGGCAACGCCAC
CCTCTGGAAGGACGTCGTCCGCGCCGCGGGCGCCGCGGTGGTGACCGAACAGGGCGTGCTGGCCGTCGGGCTCACCCCGT
CGGACGCCGAGATCCTGGCCATCGTCGAGCGCCTTCGGGCGGAAGACCGCGAGACGGCGGCCTTCGACAGCATGGCCGCG
GTCTGGCCCGAGACCGCCAGCTACGCGGAGCGGGCGAGCGGCCTCCTGGCGATCTCGATCTCCCAGCTCCACTCGAACTA
TCTGCTGTGGTTCCGGCCCGAGCTCGTCCGCACCGTCGAATGGGCCGGCGAGCCCCAGAAGCCGCGGGAAGTGGGCGACC
GCCTGCATCCGCGACAGTCGTTCCGGCTGTGGAAGGAGCAGGTGCGCCAGCGCTCGGCGCCCTGGACCCTCTCCGAGATC
GAGAGCGCCCGCAGCTTCCGGGCCTCGATCCAGAACTTCGTGCTGCGCCGCGCCGAGGAGCGGGCCGAGCTCACCAGCCG
TCTCGTGGAGATCAACCGCGAGCTGGAGAGCTTCTCCTACTCGATCTCGCACGACCTGCGGGCGCCGTTCCGGCATGTCG
TCGGCTTCGCGGAGCTGCTGTCCGACCGGATCGGCGACCAGCTCGACGCCACGGCCCGTCACTACCTGCAGAGCATCACC
GAGGCGGCGCTCTCGGCGGGCCGCCTGGTGGACGACCTCCTGAACTTCTCCCAACTCGGCCGCTCCAGCCTGAAGCCCAC
GCGGGTGGATCTGGAGAAGTTGATGGTCGAGGTGCGCCGCTCGATGGGGCCCGACCTCGACGGCCGGCCCATCGAATGGC
GCGTCGGCGCCCTGCCCAGCGCATGGGCCGATCCGGCCATGATCCGGCAGGTGCTGCAGAACCTGCTGCACAACGCCGTC
AAGTACTCGGCGGGGCGCGACCCGGCCGTCATCACGGTGGAGGGCGAGGACCGCGGCGACGTCACCGCCTACACGATCGC
CGACAACGGGGTCGGCTTCGACCCGGCCTATTCGCACAAGCTGTTCGGGGTCTTCCAGCGCCTGCACCGGTCCGAAGAAT
TCGAGGGCACCGGCATCGGCCTGGCGCTGGTCAAGCGGGTGATCGACCGCCACGGCGGAACCATCGACGCGCACGGGCGT
CCTGGCGAAGGCGCCAGCTTCACCTTCACCCTACCCAAGCGCCCCCGGGCGGAATCACACGGAGAGTTCGAGCTTGGCTG
A

Upstream 100 bases:

>100_bases
AATTTCAGGATTGGGCCGAAACGCGGGCGCCGCCGGCGCGCCGCGACGCGGCGGTCGCGGGGGCGCGGCGCACCTTCGAG
GTGCTGGAGGCCTGGCTGAC

Downstream 100 bases:

>100_bases
CCTGAGGCCCATCCTGCTGGTCGAGGACAATCCGCGGGACCTCGAGCTCACCTTGGCCGCCCTGGCCAAGTGCCAGCTCG
CCAACGATATCGTGGTCGCC

Product: bacteriophytochrome protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 746; Mature: 746

Protein sequence:

>746_residues
MNDVTLDPTLDLDACAAEPIRIPGGIQPHGALLVLSPEGFEVLQASENLAAVTGLAAESGRPLADLPEAASLVAELERWL
AAGDSLLLRALRIGEATFQISAHRTAQGLLVEFEPPASEAETLDALYPRLGRFLDGIAQAEGVGEVAQIAVREIRALTGF
NRVLLYSFDSEGTGTVLAEDGDGVLPSYLNLRFPGSDIPAQARELYKLNRIRLIPTADYAPAAIVPPLSPVDGQPLDLSL
AALRSVSPVHLQYMRNMGTGASMSVSILVKGELWGLISGHSREPRHVNAQVRTACDILGQILSLQIEAREQAQRTAERLA
LKDVETALIARVSAAQSYQDGLAGNATLWKDVVRAAGAAVVTEQGVLAVGLTPSDAEILAIVERLRAEDRETAAFDSMAA
VWPETASYAERASGLLAISISQLHSNYLLWFRPELVRTVEWAGEPQKPREVGDRLHPRQSFRLWKEQVRQRSAPWTLSEI
ESARSFRASIQNFVLRRAEERAELTSRLVEINRELESFSYSISHDLRAPFRHVVGFAELLSDRIGDQLDATARHYLQSIT
EAALSAGRLVDDLLNFSQLGRSSLKPTRVDLEKLMVEVRRSMGPDLDGRPIEWRVGALPSAWADPAMIRQVLQNLLHNAV
KYSAGRDPAVITVEGEDRGDVTAYTIADNGVGFDPAYSHKLFGVFQRLHRSEEFEGTGIGLALVKRVIDRHGGTIDAHGR
PGEGASFTFTLPKRPRAESHGEFELG

Sequences:

>Translated_746_residues
MNDVTLDPTLDLDACAAEPIRIPGGIQPHGALLVLSPEGFEVLQASENLAAVTGLAAESGRPLADLPEAASLVAELERWL
AAGDSLLLRALRIGEATFQISAHRTAQGLLVEFEPPASEAETLDALYPRLGRFLDGIAQAEGVGEVAQIAVREIRALTGF
NRVLLYSFDSEGTGTVLAEDGDGVLPSYLNLRFPGSDIPAQARELYKLNRIRLIPTADYAPAAIVPPLSPVDGQPLDLSL
AALRSVSPVHLQYMRNMGTGASMSVSILVKGELWGLISGHSREPRHVNAQVRTACDILGQILSLQIEAREQAQRTAERLA
LKDVETALIARVSAAQSYQDGLAGNATLWKDVVRAAGAAVVTEQGVLAVGLTPSDAEILAIVERLRAEDRETAAFDSMAA
VWPETASYAERASGLLAISISQLHSNYLLWFRPELVRTVEWAGEPQKPREVGDRLHPRQSFRLWKEQVRQRSAPWTLSEI
ESARSFRASIQNFVLRRAEERAELTSRLVEINRELESFSYSISHDLRAPFRHVVGFAELLSDRIGDQLDATARHYLQSIT
EAALSAGRLVDDLLNFSQLGRSSLKPTRVDLEKLMVEVRRSMGPDLDGRPIEWRVGALPSAWADPAMIRQVLQNLLHNAV
KYSAGRDPAVITVEGEDRGDVTAYTIADNGVGFDPAYSHKLFGVFQRLHRSEEFEGTGIGLALVKRVIDRHGGTIDAHGR
PGEGASFTFTLPKRPRAESHGEFELG
>Mature_746_residues
MNDVTLDPTLDLDACAAEPIRIPGGIQPHGALLVLSPEGFEVLQASENLAAVTGLAAESGRPLADLPEAASLVAELERWL
AAGDSLLLRALRIGEATFQISAHRTAQGLLVEFEPPASEAETLDALYPRLGRFLDGIAQAEGVGEVAQIAVREIRALTGF
NRVLLYSFDSEGTGTVLAEDGDGVLPSYLNLRFPGSDIPAQARELYKLNRIRLIPTADYAPAAIVPPLSPVDGQPLDLSL
AALRSVSPVHLQYMRNMGTGASMSVSILVKGELWGLISGHSREPRHVNAQVRTACDILGQILSLQIEAREQAQRTAERLA
LKDVETALIARVSAAQSYQDGLAGNATLWKDVVRAAGAAVVTEQGVLAVGLTPSDAEILAIVERLRAEDRETAAFDSMAA
VWPETASYAERASGLLAISISQLHSNYLLWFRPELVRTVEWAGEPQKPREVGDRLHPRQSFRLWKEQVRQRSAPWTLSEI
ESARSFRASIQNFVLRRAEERAELTSRLVEINRELESFSYSISHDLRAPFRHVVGFAELLSDRIGDQLDATARHYLQSIT
EAALSAGRLVDDLLNFSQLGRSSLKPTRVDLEKLMVEVRRSMGPDLDGRPIEWRVGALPSAWADPAMIRQVLQNLLHNAV
KYSAGRDPAVITVEGEDRGDVTAYTIADNGVGFDPAYSHKLFGVFQRLHRSEEFEGTGIGLALVKRVIDRHGGTIDAHGR
PGEGASFTFTLPKRPRAESHGEFELG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=253, Percent_Identity=31.6205533596838, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI48994928, Length=252, Percent_Identity=27.7777777777778, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081816, Length=255, Percent_Identity=29.0196078431373, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788713, Length=253, Percent_Identity=27.6679841897233, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789149, Length=254, Percent_Identity=26.3779527559055, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1790436, Length=226, Percent_Identity=29.2035398230088, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1788549, Length=250, Percent_Identity=28.4, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI145693157, Length=223, Percent_Identity=25.5605381165919, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786783, Length=242, Percent_Identity=28.099173553719, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1786600, Length=226, Percent_Identity=26.1061946902655, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1790346, Length=222, Percent_Identity=26.5765765765766, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 81382; Mature: 81382

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDVTLDPTLDLDACAAEPIRIPGGIQPHGALLVLSPEGFEVLQASENLAAVTGLAAESG
CCCCCCCCCCCCHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHCCC
RPLADLPEAASLVAELERWLAAGDSLLLRALRIGEATFQISAHRTAQGLLVEFEPPASEA
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCHH
ETLDALYPRLGRFLDGIAQAEGVGEVAQIAVREIRALTGFNRVLLYSFDSEGTGTVLAED
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEC
GDGVLPSYLNLRFPGSDIPAQARELYKLNRIRLIPTADYAPAAIVPPLSPVDGQPLDLSL
CCCCCCHHHEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
AALRSVSPVHLQYMRNMGTGASMSVSILVKGELWGLISGHSREPRHVNAQVRTACDILGQ
HHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHH
ILSLQIEAREQAQRTAERLALKDVETALIARVSAAQSYQDGLAGNATLWKDVVRAAGAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEE
VTEQGVLAVGLTPSDAEILAIVERLRAEDRETAAFDSMAAVWPETASYAERASGLLAISI
EECCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEH
SQLHSNYLLWFRPELVRTVEWAGEPQKPREVGDRLHPRQSFRLWKEQVRQRSAPWTLSEI
HHHHCCCEEEECHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
ESARSFRASIQNFVLRRAEERAELTSRLVEINRELESFSYSISHDLRAPFRHVVGFAELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDRIGDQLDATARHYLQSITEAALSAGRLVDDLLNFSQLGRSSLKPTRVDLEKLMVEVRR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
SMGPDLDGRPIEWRVGALPSAWADPAMIRQVLQNLLHNAVKYSAGRDPAVITVEGEDRGD
HCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
VTAYTIADNGVGFDPAYSHKLFGVFQRLHRSEEFEGTGIGLALVKRVIDRHGGTIDAHGR
EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCC
PGEGASFTFTLPKRPRAESHGEFELG
CCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNDVTLDPTLDLDACAAEPIRIPGGIQPHGALLVLSPEGFEVLQASENLAAVTGLAAESG
CCCCCCCCCCCCHHHCCCCEECCCCCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHCCC
RPLADLPEAASLVAELERWLAAGDSLLLRALRIGEATFQISAHRTAQGLLVEFEPPASEA
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCHH
ETLDALYPRLGRFLDGIAQAEGVGEVAQIAVREIRALTGFNRVLLYSFDSEGTGTVLAED
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEC
GDGVLPSYLNLRFPGSDIPAQARELYKLNRIRLIPTADYAPAAIVPPLSPVDGQPLDLSL
CCCCCCHHHEEECCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
AALRSVSPVHLQYMRNMGTGASMSVSILVKGELWGLISGHSREPRHVNAQVRTACDILGQ
HHHHCCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHH
ILSLQIEAREQAQRTAERLALKDVETALIARVSAAQSYQDGLAGNATLWKDVVRAAGAAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEE
VTEQGVLAVGLTPSDAEILAIVERLRAEDRETAAFDSMAAVWPETASYAERASGLLAISI
EECCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEH
SQLHSNYLLWFRPELVRTVEWAGEPQKPREVGDRLHPRQSFRLWKEQVRQRSAPWTLSEI
HHHHCCCEEEECHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHH
ESARSFRASIQNFVLRRAEERAELTSRLVEINRELESFSYSISHDLRAPFRHVVGFAELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SDRIGDQLDATARHYLQSITEAALSAGRLVDDLLNFSQLGRSSLKPTRVDLEKLMVEVRR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
SMGPDLDGRPIEWRVGALPSAWADPAMIRQVLQNLLHNAVKYSAGRDPAVITVEGEDRGD
HCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
VTAYTIADNGVGFDPAYSHKLFGVFQRLHRSEEFEGTGIGLALVKRVIDRHGGTIDAHGR
EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCC
PGEGASFTFTLPKRPRAESHGEFELG
CCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]