| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is zraS [C]
Identifier: 197105721
GI number: 197105721
Start: 2559280
End: 2561724
Strand: Reverse
Name: zraS [C]
Synonym: PHZ_c2259
Alternate gene names: 197105721
Gene position: 2561724-2559280 (Counterclockwise)
Preceding gene: 197105722
Following gene: 197105720
Centisome position: 64.1
GC content: 71.82
Gene sequence:
>2445_bases ATGCCTGACGCTGTCGGCCGGGGGCGGGCGCCGGAGGTCTCGGTCCTCCTGCTGGAGGACAGCGAGATCGACGCCGAGCT GCTGGCGGCCCATCTCGAGAAGGCGGGGATCGAGTTCACGCTGCTGCGGGCCACCAACCGGCGCGAGTTCGTCCATGCGC TGGAGGAAGAGCGCTGCGACATCATCCTCGCGGACTATTCCCTGCCGGACTTCGACGGCCTGTCGGCGCTGAACATCGCC CGGGCCCTGCAGCCGGACATCCCATTCATCTTCGTCTCGGGCGTGGTGGGGGAGGAGTTCGCCACCAACGCGCTGAAGCG CGGGGCGACGGATTATGTGCTGAAGCGCAACCTCACCCGCCTGGCCACGGCGGTCGAGCGGGCCCTGGAGCAGGCGCACG AGCGGGAGGAGCGCCGGCGGGCCGAGGAGGCGCTCTCGCGCAGCCAGATGCGGGCGCGCCTGGCCATCGAGGGCGCCCGG CTCGGCCTCTGGGACCTCGACCCGCGGAACGGGCGCCTGGAGTGCGACGCGCGCACGCGCGACTTCCTGGGCCTGCCGGC CGACGCCGAGATCACCTACAAGCGCTTCCTGAGGCTGGTGCACCCCGACGACCGCGCCACGCTGGAGGCGGAGATCGCCG GCGCCATCGCGGGCGGCGATGAGCAGGACCGCGCTCTGGTCACCGAGTTCCGCACCGGCCCGGAGGCGGCGGTCGAGCGC TGGCTCGCGCTCCGCGCCCAGGCGCTGTTCACGGACGAGACCTGCACCCGGTTCGTCGGGGTGCTGCGCGACATCACCGA GGAACGGCGGGCTCGCCAGGAGCTGAAGGGCTTCGCCGAGAAGCTCGAGCAGGAGGTGGCCGAACGGACCGCCGAACGGG ACCGGATCTGGCGGCTCAGCCGCGACCTCTTCGCCGTCGCCACCTTCGACGGGCGGCTGCGCCGGGTGAACCCCGCCTGG GAGTCCGTGCTCGGCTACGACGCCGGGGCCCTGGTCGACAGCGACTTCCACCTCCTGATCCACAAGGAGGATCTGGCGGA GGTCGAGGGAGTCATCAGGACGCTTGCCAGCGGCCAGGTCGCCCCCCGGTTCGAGGACCGCCTGCGCCACGCGGACGGCT CCTGGCGCTGGATCTCGTGGACGGCCGTGCCGGAAGGCGACGCCTTCTACGCGGTCGGGCGGGACATCACCGAGGAGAAG GCGGCGGCCGAAGCCCTCGCCGAGCGGAACGAGCAGCTCGCCGCCCAGATGGCCGAGCGCGAACGGGTCGAAAAGGAGCT GCGGCAGATGCAGCGCCTGGAGGCCGTGGGCCAGCTCACCTCGGGCGTGGCGCACGACTTCAACAACCTGCTGACCGTCA TCCTCGGCAACATCCGCTTCATCGAGAGGACGTTGCAGAGGGAGGGGCTCGACGGCGGGGTGGTCGATCGGCTCGGCCAC ATGCGGAACGCCGCCGAGCGCGGCGCCAAGCTGACCGGCCAGATGCTGGCCTTCTCGCGCCGCCAGAAGCTGGAGCCCAA GCCCGTCGACCTGAACGACACGGTCGAGAGCATGCGCGAGCTGCTGCAGAGCACGCTCGGCGGCACCGTGCGTCTCGAGA CGGTGCTCAAGACCGACCTGTGGTCGGCGCTGGTCGACCCGACGCAGATCGAGCTGATCATCCTGAACCTGGCCATCAAC GCGCGCGATGCGATGGAGGTCGGCGGCAGCCTGACCGTCGAGACGGCGAACGTCATGATCAAGGGCGAACCCGGCCGTCC CGAAGAGCCGGGGCCGGGCGAGTACGTCATGCTGGCGGTCAGCGACACCGGCCACGGCATGAGCGAAGAGGTCCTGGCCA AGGCGTTCGAGCCATTTTTCACGACCAAGGCCGTCGGCCGCGGATCCGGCCTGGGCCTGGCCCAGGTCTACGGCTTCGCC AAGCAGTCCGGCGGCGGCGTCGCCATCCGCACGCGGGAGGGCGAGGGCACGACGGTCAGCGTCTACCTGCCGAGGGCCGC GGAGGCGCCGGCGCGGCTGCCCGCCCGGCGCGAGGTCGAGGCGCCGGCCGCGCCGGCGGGCGCGACGGTGCTGCTGGTGG ACGACGACAGCGCCGTGCGCGAGGTCACCGCCTCGCTGCTGCGCGAGTTCGGCTACGGCGTGATCGAGGCCGGCAGCGGC AATGCGGCGCTCGACGCCCTGCGTGGCGCCGCCCGGATCGACCTGCTGCTCGCCGACTACGCCATGCCCGGGATGAACGG CGTCGAGACCGTCCGCGAGGCCCAGCGCCTGCGGCCGGGCCTGCCCAGCCTGTTCATCACCGGCTTCGCGGATCTGGCGG CGCTGCGCGAGGTCGGCGAGGAACGGATCATCCAGAAGCCGTTCCGCGACGACGAACTTGGCCGCAAGGTCGCCGCGATC CTGGGCGGCGAGCGCGGCGCCAACGTCGTCTCCCTGCGACGCTGA
Upstream 100 bases:
>100_bases GTGGTGAAGCCCGTGGACTTCAACGCCTTCTTCGAGGCCATCCAGGACCTCGGCATGTTCTGGGCGATCCTCAACGAGCC GCCGCCGCGGGGGCTGGCCC
Downstream 100 bases:
>100_bases CGTCCGCGGAAAGCGGCTTGGCGTCGCCCGCGGTTGCTGCCAAAACACGGGCAGGAAGCGCATACCCGTTTTTCGAGCCG GAACACCGGCCTGACGGGCG
Product: sensor histidine kinase/response regulator
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MPDAVGRGRAPEVSVLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCDIILADYSLPDFDGLSALNIA RALQPDIPFIFVSGVVGEEFATNALKRGATDYVLKRNLTRLATAVERALEQAHEREERRRAEEALSRSQMRARLAIEGAR LGLWDLDPRNGRLECDARTRDFLGLPADAEITYKRFLRLVHPDDRATLEAEIAGAIAGGDEQDRALVTEFRTGPEAAVER WLALRAQALFTDETCTRFVGVLRDITEERRARQELKGFAEKLEQEVAERTAERDRIWRLSRDLFAVATFDGRLRRVNPAW ESVLGYDAGALVDSDFHLLIHKEDLAEVEGVIRTLASGQVAPRFEDRLRHADGSWRWISWTAVPEGDAFYAVGRDITEEK AAAEALAERNEQLAAQMAERERVEKELRQMQRLEAVGQLTSGVAHDFNNLLTVILGNIRFIERTLQREGLDGGVVDRLGH MRNAAERGAKLTGQMLAFSRRQKLEPKPVDLNDTVESMRELLQSTLGGTVRLETVLKTDLWSALVDPTQIELIILNLAIN ARDAMEVGGSLTVETANVMIKGEPGRPEEPGPGEYVMLAVSDTGHGMSEEVLAKAFEPFFTTKAVGRGSGLGLAQVYGFA KQSGGGVAIRTREGEGTTVSVYLPRAAEAPARLPARREVEAPAAPAGATVLLVDDDSAVREVTASLLREFGYGVIEAGSG NAALDALRGAARIDLLLADYAMPGMNGVETVREAQRLRPGLPSLFITGFADLAALREVGEERIIQKPFRDDELGRKVAAI LGGERGANVVSLRR
Sequences:
>Translated_814_residues MPDAVGRGRAPEVSVLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCDIILADYSLPDFDGLSALNIA RALQPDIPFIFVSGVVGEEFATNALKRGATDYVLKRNLTRLATAVERALEQAHEREERRRAEEALSRSQMRARLAIEGAR LGLWDLDPRNGRLECDARTRDFLGLPADAEITYKRFLRLVHPDDRATLEAEIAGAIAGGDEQDRALVTEFRTGPEAAVER WLALRAQALFTDETCTRFVGVLRDITEERRARQELKGFAEKLEQEVAERTAERDRIWRLSRDLFAVATFDGRLRRVNPAW ESVLGYDAGALVDSDFHLLIHKEDLAEVEGVIRTLASGQVAPRFEDRLRHADGSWRWISWTAVPEGDAFYAVGRDITEEK AAAEALAERNEQLAAQMAERERVEKELRQMQRLEAVGQLTSGVAHDFNNLLTVILGNIRFIERTLQREGLDGGVVDRLGH MRNAAERGAKLTGQMLAFSRRQKLEPKPVDLNDTVESMRELLQSTLGGTVRLETVLKTDLWSALVDPTQIELIILNLAIN ARDAMEVGGSLTVETANVMIKGEPGRPEEPGPGEYVMLAVSDTGHGMSEEVLAKAFEPFFTTKAVGRGSGLGLAQVYGFA KQSGGGVAIRTREGEGTTVSVYLPRAAEAPARLPARREVEAPAAPAGATVLLVDDDSAVREVTASLLREFGYGVIEAGSG NAALDALRGAARIDLLLADYAMPGMNGVETVREAQRLRPGLPSLFITGFADLAALREVGEERIIQKPFRDDELGRKVAAI LGGERGANVVSLRR >Mature_813_residues PDAVGRGRAPEVSVLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCDIILADYSLPDFDGLSALNIAR ALQPDIPFIFVSGVVGEEFATNALKRGATDYVLKRNLTRLATAVERALEQAHEREERRRAEEALSRSQMRARLAIEGARL GLWDLDPRNGRLECDARTRDFLGLPADAEITYKRFLRLVHPDDRATLEAEIAGAIAGGDEQDRALVTEFRTGPEAAVERW LALRAQALFTDETCTRFVGVLRDITEERRARQELKGFAEKLEQEVAERTAERDRIWRLSRDLFAVATFDGRLRRVNPAWE SVLGYDAGALVDSDFHLLIHKEDLAEVEGVIRTLASGQVAPRFEDRLRHADGSWRWISWTAVPEGDAFYAVGRDITEEKA AAEALAERNEQLAAQMAERERVEKELRQMQRLEAVGQLTSGVAHDFNNLLTVILGNIRFIERTLQREGLDGGVVDRLGHM RNAAERGAKLTGQMLAFSRRQKLEPKPVDLNDTVESMRELLQSTLGGTVRLETVLKTDLWSALVDPTQIELIILNLAINA RDAMEVGGSLTVETANVMIKGEPGRPEEPGPGEYVMLAVSDTGHGMSEEVLAKAFEPFFTTKAVGRGSGLGLAQVYGFAK QSGGGVAIRTREGEGTTVSVYLPRAAEAPARLPARREVEAPAAPAGATVLLVDDDSAVREVTASLLREFGYGVIEAGSGN AALDALRGAARIDLLLADYAMPGMNGVETVREAQRLRPGLPSLFITGFADLAALREVGEERIIQKPFRDDELGRKVAAIL GGERGANVVSLRR
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=249, Percent_Identity=30.1204819277108, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI87081816, Length=438, Percent_Identity=25.7990867579909, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1788549, Length=363, Percent_Identity=25.6198347107438, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI48994928, Length=429, Percent_Identity=26.1072261072261, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788713, Length=401, Percent_Identity=24.6882793017456, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI145693157, Length=294, Percent_Identity=25.5102040816327, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 89523; Mature: 89391
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDAVGRGRAPEVSVLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCD CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC IILADYSLPDFDGLSALNIARALQPDIPFIFVSGVVGEEFATNALKRGATDYVLKRNLTR EEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHH LATAVERALEQAHEREERRRAEEALSRSQMRARLAIEGARLGLWDLDPRNGRLECDARTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECEEECCCCCCEEEECCCCC DFLGLPADAEITYKRFLRLVHPDDRATLEAEIAGAIAGGDEQDRALVTEFRTGPEAAVER CCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHH WLALRAQALFTDETCTRFVGVLRDITEERRARQELKGFAEKLEQEVAERTAERDRIWRLS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDLFAVATFDGRLRRVNPAWESVLGYDAGALVDSDFHLLIHKEDLAEVEGVIRTLASGQV HHEEEEEECCCCEEECCHHHHHHHCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHHCCCC APRFEDRLRHADGSWRWISWTAVPEGDAFYAVGRDITEEKAAAEALAERNEQLAAQMAER CCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH ERVEKELRQMQRLEAVGQLTSGVAHDFNNLLTVILGNIRFIERTLQREGLDGGVVDRLGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH MRNAAERGAKLTGQMLAFSRRQKLEPKPVDLNDTVESMRELLQSTLGGTVRLETVLKTDL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHH WSALVDPTQIELIILNLAINARDAMEVGGSLTVETANVMIKGEPGRPEEPGPGEYVMLAV HHHHCCCCEEEEEEEEEEECCHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE SDTGHGMSEEVLAKAFEPFFTTKAVGRGSGLGLAQVYGFAKQSGGGVAIRTREGEGTTVS ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEE VYLPRAAEAPARLPARREVEAPAAPAGATVLLVDDDSAVREVTASLLREFGYGVIEAGSG EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC NAALDALRGAARIDLLLADYAMPGMNGVETVREAQRLRPGLPSLFITGFADLAALREVGE CHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ERIIQKPFRDDELGRKVAAILGGERGANVVSLRR HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECC >Mature Secondary Structure PDAVGRGRAPEVSVLLLEDSEIDAELLAAHLEKAGIEFTLLRATNRREFVHALEEERCD CCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCC IILADYSLPDFDGLSALNIARALQPDIPFIFVSGVVGEEFATNALKRGATDYVLKRNLTR EEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHH LATAVERALEQAHEREERRRAEEALSRSQMRARLAIEGARLGLWDLDPRNGRLECDARTR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEECEEECCCCCCEEEECCCCC DFLGLPADAEITYKRFLRLVHPDDRATLEAEIAGAIAGGDEQDRALVTEFRTGPEAAVER CCCCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHH WLALRAQALFTDETCTRFVGVLRDITEERRARQELKGFAEKLEQEVAERTAERDRIWRLS HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDLFAVATFDGRLRRVNPAWESVLGYDAGALVDSDFHLLIHKEDLAEVEGVIRTLASGQV HHEEEEEECCCCEEECCHHHHHHHCCCCCCEECCCCEEEEEHHHHHHHHHHHHHHHCCCC APRFEDRLRHADGSWRWISWTAVPEGDAFYAVGRDITEEKAAAEALAERNEQLAAQMAER CCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH ERVEKELRQMQRLEAVGQLTSGVAHDFNNLLTVILGNIRFIERTLQREGLDGGVVDRLGH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH MRNAAERGAKLTGQMLAFSRRQKLEPKPVDLNDTVESMRELLQSTLGGTVRLETVLKTDL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHH WSALVDPTQIELIILNLAINARDAMEVGGSLTVETANVMIKGEPGRPEEPGPGEYVMLAV HHHHCCCCEEEEEEEEEEECCHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCEEEEEE SDTGHGMSEEVLAKAFEPFFTTKAVGRGSGLGLAQVYGFAKQSGGGVAIRTREGEGTTVS ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCEEE VYLPRAAEAPARLPARREVEAPAAPAGATVLLVDDDSAVREVTASLLREFGYGVIEAGSG EEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC NAALDALRGAARIDLLLADYAMPGMNGVETVREAQRLRPGLPSLFITGFADLAALREVGE CHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH ERIIQKPFRDDELGRKVAAILGGERGANVVSLRR HHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA