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The map label for this gene is exbD [H]

Identifier: 197105654

GI number: 197105654

Start: 2477904

End: 2478338

Strand: Reverse

Name: exbD [H]

Synonym: PHZ_c2191

Alternate gene names: 197105654

Gene position: 2478338-2477904 (Counterclockwise)

Preceding gene: 197105655

Following gene: 197105653

Centisome position: 62.02

GC content: 61.61

Gene sequence:

>435_bases
ATGGCCGCCAAACTCTCGAGTTCCGGGGGGGCGGACCGCTATCAGGAAGATCAGAACGCCGACATCAATGTCACGCCTTT
CGTGGACGTGATGCTGGTTCTTCTGATCATCTTCATGGTGGCCGCGCCCATGGCGGCCGTGACGGTCAAGGTGGCCTTGC
CGCCCGCCGTCGCACCGCCGGGCGTGAATCCGCCGAAGCCGGTCTACATCTCGATCCAGTCGAACGGCAGCATCTTCATC
CAGGACTTCAGGACCGACCTGTCGACCCTGGGCGATGATCTCCGTCAGCAGCTGGGCGGGACGCGGAACCCGACCAAGGA
ACGCATCTTCATCCGGGCCGACAAGGACGTGATGTACGGTGACTTCATGGGCGTGATGAACATGCTGCAGGACAACGGGT
TCTACAGCGTGGCTCTCGTCGGTGAAGAGCAGTAG

Upstream 100 bases:

>100_bases
TCCAGACCCGCATCTCGGCCTACGGCGCCCGCACCGAGGGTTTCGTCGCCGAACTGATGAACGCGATCTCGCGCCAGCTC
GACAAGGGAGCCTAAGCTAG

Downstream 100 bases:

>100_bases
GTGGTGAAGCATGGCTGAGACATCACCGAACGAAGCCGTCCACGTCCGGCACAACCCGTTCGACGACCCCAAGCCCAAGC
GCAGCAAGGGCATCACGGTC

Product: ExbD/TolR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MAAKLSSSGGADRYQEDQNADINVTPFVDVMLVLLIIFMVAAPMAAVTVKVALPPAVAPPGVNPPKPVYISIQSNGSIFI
QDFRTDLSTLGDDLRQQLGGTRNPTKERIFIRADKDVMYGDFMGVMNMLQDNGFYSVALVGEEQ

Sequences:

>Translated_144_residues
MAAKLSSSGGADRYQEDQNADINVTPFVDVMLVLLIIFMVAAPMAAVTVKVALPPAVAPPGVNPPKPVYISIQSNGSIFI
QDFRTDLSTLGDDLRQQLGGTRNPTKERIFIRADKDVMYGDFMGVMNMLQDNGFYSVALVGEEQ
>Mature_143_residues
AAKLSSSGGADRYQEDQNADINVTPFVDVMLVLLIIFMVAAPMAAVTVKVALPPAVAPPGVNPPKPVYISIQSNGSIFIQ
DFRTDLSTLGDDLRQQLGGTRNPTKERIFIRADKDVMYGDFMGVMNMLQDNGFYSVALVGEEQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=123, Percent_Identity=49.5934959349593, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15626; Mature: 15495

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKLSSSGGADRYQEDQNADINVTPFVDVMLVLLIIFMVAAPMAAVTVKVALPPAVAPP
CCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCC
GVNPPKPVYISIQSNGSIFIQDFRTDLSTLGDDLRQQLGGTRNPTKERIFIRADKDVMYG
CCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
DFMGVMNMLQDNGFYSVALVGEEQ
HHHHHHHHHHCCCCEEEEEEECCC
>Mature Secondary Structure 
AAKLSSSGGADRYQEDQNADINVTPFVDVMLVLLIIFMVAAPMAAVTVKVALPPAVAPP
CCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCC
GVNPPKPVYISIQSNGSIFIQDFRTDLSTLGDDLRQQLGGTRNPTKERIFIRADKDVMYG
CCCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHH
DFMGVMNMLQDNGFYSVALVGEEQ
HHHHHHHHHHCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]