| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197105402
Identifier: 197105402
GI number: 197105402
Start: 2171234
End: 2171656
Strand: Direct
Name: 197105402
Synonym: PHZ_c1939
Alternate gene names: NA
Gene position: 2171234-2171656 (Clockwise)
Preceding gene: 197105401
Following gene: 197105403
Centisome position: 54.33
GC content: 71.16
Gene sequence:
>423_bases ATGACGACGCTGGAGCTTCCGGCGGGCTTTAGCCCGCACTTCCGCAAGAGCCCCCTCACCGACCCGTGGGAGCCGCTCTA CAGCCGGGTGACGGACGACACGGTGATACTCGCCCTGCGCGCGGGCGCGGCCCACACCAACAGCCGCGGCTTCGTGCACG GCGGGCTGATCTCGGCCCTCGCCGACAACGCCATGGGCCTGTCCTGCGCCCGACGGCTGGGAGACCTGGCCAGCCTCGTC ACGGTGAACCTCAACGTGGACTACCTGGGCTCGGCGCTGACCGGCCAATGGCTGGAGTTCGACACCGTCTTCGTGCGGCC TGGCTCCACCCTGTGCTTCGCCCAGGCGTTCGTCACCGCCGACGGCCGGCCCTGCGCGCGGGCCAACGCGGTGTTCCGCG TCGTGCGGAGGACGCCGGCATGA
Upstream 100 bases:
>100_bases AGGGCTTCTTCCACGGCCATTTCCGGGTGAAGGGCGCCGAGGCGGCCCGGGCCTGCCACGGCACGCTGGAGAGCCTGGCG CGCATCGCGAGGGCGGCGTG
Downstream 100 bases:
>100_bases CCTGCTACCTCGTGGGCCGCATCGCCATCCACGACCGCGAGCGGTACGGCCGCTACGCGGCGGCCTTCATGCCGGTGCTG AAGCAGTACGGCGGCCGGCT
Product: putative phenylacetic acid degradation-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTTLELPAGFSPHFRKSPLTDPWEPLYSRVTDDTVILALRAGAAHTNSRGFVHGGLISALADNAMGLSCARRLGDLASLV TVNLNVDYLGSALTGQWLEFDTVFVRPGSTLCFAQAFVTADGRPCARANAVFRVVRRTPA
Sequences:
>Translated_140_residues MTTLELPAGFSPHFRKSPLTDPWEPLYSRVTDDTVILALRAGAAHTNSRGFVHGGLISALADNAMGLSCARRLGDLASLV TVNLNVDYLGSALTGQWLEFDTVFVRPGSTLCFAQAFVTADGRPCARANAVFRVVRRTPA >Mature_139_residues TTLELPAGFSPHFRKSPLTDPWEPLYSRVTDDTVILALRAGAAHTNSRGFVHGGLISALADNAMGLSCARRLGDLASLVT VNLNVDYLGSALTGQWLEFDTVFVRPGSTLCFAQAFVTADGRPCARANAVFRVVRRTPA
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioesterase PaaI family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003736 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: NA
Molecular weight: Translated: 15035; Mature: 14904
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLELPAGFSPHFRKSPLTDPWEPLYSRVTDDTVILALRAGAAHTNSRGFVHGGLISAL CCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEHHHHHHH ADNAMGLSCARRLGDLASLVTVNLNVDYLGSALTGQWLEFDTVFVRPGSTLCFAQAFVTA HCCCCCHHHHHHHHHHHHEEEEECCHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEEECC DGRPCARANAVFRVVRRTPA CCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure TTLELPAGFSPHFRKSPLTDPWEPLYSRVTDDTVILALRAGAAHTNSRGFVHGGLISAL CEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEHHHHHHH ADNAMGLSCARRLGDLASLVTVNLNVDYLGSALTGQWLEFDTVFVRPGSTLCFAQAFVTA HCCCCCHHHHHHHHHHHHEEEEECCHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEEECC DGRPCARANAVFRVVRRTPA CCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]