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The map label for this gene is rpoE [H]

Identifier: 197105370

GI number: 197105370

Start: 2134971

End: 2135510

Strand: Direct

Name: rpoE [H]

Synonym: PHZ_c1907

Alternate gene names: 197105370

Gene position: 2134971-2135510 (Clockwise)

Preceding gene: 197105368

Following gene: 197105371

Centisome position: 53.42

GC content: 70.93

Gene sequence:

>540_bases
ATGAGTTCGACGTCCAGTTGGCGGGACGAGGTGGTGGGCATGATCCCGGCGCTGCGGGCGTTCGCCTGGTCCCTCAGCCA
CAACGGCTCGGACGCCGACGACCTCGTCCAGGACACGCTGATCAAGGCCTGGACCAACCGGGACAAGTTCGAGCCCGGCA
CCAACCTGCGCGCCTGGCTTTTCACCATCCTGCGGAACACCTACTACACGAGCGTCCTGCGCCGCCGCCGCGAGGTGCGC
GACGAGACCGGCGAGTACGCCGGCGGGCTGAGGTCGCCGCCGACCCAGGACTGGAGCGTGGCCATGCGCTCGCTGCAGGC
GGCCCTGCAGCAGCTGCCGGCCGAGCACCGCGAGGCGCTGATCCTGGTCGGCGCGGCGGGCCTGTCCTACGAGGAGGCGG
CCGAGATCTGCGGCTGCGCGCTCGGCACCATCAAGAGCCGGGTGAACCGCGCACGCGCCCGCCTGCTGAAGATCATGGAC
GCCGAGGACGCGACCGACGTGATGGCGCTGGAGTCCGCCACCGCCATGGGCACCGCCTAG

Upstream 100 bases:

>100_bases
CGCTTAGGTTCCCGGAACGGTTGCCAGGGGGGCGCGTTGAACGGGCCAACCGAGAGCTAGCGCAGCCGGCCCACCGCTCC
CCCGGGCCCAAGAGGACAGC

Downstream 100 bases:

>100_bases
GCGGACTTCCTGGCCGGCGCCGCGGAGGGCGCTGCGGGCGAGCCCTCGTCCAGCTGTTCGACCACCGAGCGGAGCCGGTC
CGGCAGCGGGCGGGCCTGCA

Product: RNA polymerase sigma-70 factor, ECF subfamily

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSSTSSWRDEVVGMIPALRAFAWSLSHNGSDADDLVQDTLIKAWTNRDKFEPGTNLRAWLFTILRNTYYTSVLRRRREVR
DETGEYAGGLRSPPTQDWSVAMRSLQAALQQLPAEHREALILVGAAGLSYEEAAEICGCALGTIKSRVNRARARLLKIMD
AEDATDVMALESATAMGTA

Sequences:

>Translated_179_residues
MSSTSSWRDEVVGMIPALRAFAWSLSHNGSDADDLVQDTLIKAWTNRDKFEPGTNLRAWLFTILRNTYYTSVLRRRREVR
DETGEYAGGLRSPPTQDWSVAMRSLQAALQQLPAEHREALILVGAAGLSYEEAAEICGCALGTIKSRVNRARARLLKIMD
AEDATDVMALESATAMGTA
>Mature_178_residues
SSTSSWRDEVVGMIPALRAFAWSLSHNGSDADDLVQDTLIKAWTNRDKFEPGTNLRAWLFTILRNTYYTSVLRRRREVRD
ETGEYAGGLRSPPTQDWSVAMRSLQAALQQLPAEHREALILVGAAGLSYEEAAEICGCALGTIKSRVNRARARLLKIMDA
EDATDVMALESATAMGTA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=134, Percent_Identity=32.089552238806, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19764; Mature: 19632

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTSSWRDEVVGMIPALRAFAWSLSHNGSDADDLVQDTLIKAWTNRDKFEPGTNLRAWL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FTILRNTYYTSVLRRRREVRDETGEYAGGLRSPPTQDWSVAMRSLQAALQQLPAEHREAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHEE
ILVGAAGLSYEEAAEICGCALGTIKSRVNRARARLLKIMDAEDATDVMALESATAMGTA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSTSSWRDEVVGMIPALRAFAWSLSHNGSDADDLVQDTLIKAWTNRDKFEPGTNLRAWL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FTILRNTYYTSVLRRRREVRDETGEYAGGLRSPPTQDWSVAMRSLQAALQQLPAEHREAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHEE
ILVGAAGLSYEEAAEICGCALGTIKSRVNRARARLLKIMDAEDATDVMALESATAMGTA
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]