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The map label for this gene is cydD

Identifier: 197105293

GI number: 197105293

Start: 2047864

End: 2049378

Strand: Reverse

Name: cydD

Synonym: PHZ_c1830

Alternate gene names: NA

Gene position: 2049378-2047864 (Counterclockwise)

Preceding gene: 197105294

Following gene: 197105292

Centisome position: 51.28

GC content: 75.71

Gene sequence:

>1515_bases
GTGCCGATCCGACTTCCGACTTTCCGGCTCAAGCTCGCGGCGAGCCTGCTGCTCGTCGCGGGCGCCGACGTTCTGCTGTT
CGACCGCTACCCGGGCGCCGGCGTCGGCGTCCTGAGCCTGGCGCTGCTGGCGGCGGTTGTGGCGACCAATCCGGCCATCC
TGCACCGCCGGCTCGGCATTTTCGCCCTCGTGGCGGCCGCCTGGTTCGCGCTTCTTCAGGTCGAACGGGCGACCCTCCTG
GGCGGGCTGCTGTTCGCGCTCGCCCTTGGCGTCGCGGCGCTCGCGCCGCGGGCGGGGGAGGGCGAGGACGCGCTCCGCTG
GACCCGCCGGTTGGCCGTGGCGGGCGTGAAGGGCCTCTTCGGGCCGATCCTCGACCTGCGGCCGCTGCGCCAGGCGGCCG
GACGCCGCCCAGGTCCCCGGGCGCCCGCAAGGCTGGCGGCCGCGGCGCTGCCGGTGGCGGGCGGCGCGGTGTTCCTGGGG
CTGTTCGCCGCCGCCAATCCCCTGATCGCCGAGGCGTTCGCGCGGCTGCGGCTGCCGGCCATCGAGCCCGCGCGGCTGGT
GTTCTGGGGTCTCGCCGGCGCCGTCGCCTGGACGGCCCTGCGGCCGAGAGGGCTGAAGCCCCGCCTGGCGTCCCGGCCCA
GGCGAATCCGCGATGGCGCCCGTCCGGTCGCCTCCACAGCCTCGGTCGCCGCCTCCCTGGTGGTGTTCAACCTGGTCTTC
GCCCTGCAGAACGGTCTCGACGCCGCCTTCCTGTGGAGCGGGGCGCGGCTGCCCTCGGACATGAGCCATGCGGAATACGC
CCACCGCGGCGCCTATCCGCTGGTGGCGACGGCTCTGCTCGCCGGCGCGTTCGTGCTGGTCTTCCTGCGGCCGGGGTCCG
CGACGTCGGCGTCGCGGCCGGTCCGCGCCCTGCTGGCCGCCTGGATCGCGCAGAACCTGTTCCTGCTCGCCTCCACCGCC
CTGCGAACCCTTGAGTACGTCGACGCCTACGCGCTCACCCGCACGCGGATCGCCGCGCTCCTGTGGATGGGGCTGGTGGC
GGCGGGCCTCGCCCTGATCGCCTGGCGGCTGCTGGCCGGCAGGAGCGGCCGCTGGCTGGTCAACGCCAATGCCGCCTGCG
CCGGGGCCGTGCTCGTCCTGTGCAGCCTCGTGGATCTCGGCGCCGTGGCGGCGGCGTGGAACGTGCGCCACGCCCGGGAG
GTCGGCGGCCGCGGCGTGGCTCTGGACCTCTGCTACCTGGGACGGCTGGAGGGCGCCGCGCTGGTCTCGCTGGCCGAGCT
GGAACAGCGTCCGCTGCCTCCCGATCTGGCCGACCGCGTCCGCTGGAAACGGCAGGAGGTTCGCGCCGGCATGCTGCGCC
GGCAGGCCGACTGGCGCAGCTGGCGCTGGCGCGATGCCCGGCGGCTCGCGCGCGACGCCGGCCTTCCCGGCGCCTTGCCG
CCTCCGCTGCCGGGCGAGCGGGGCTGCGACGGACGACCTCGGCCGTTGACGCCTCCGGCGAAGCCCGGAACATGA

Upstream 100 bases:

>100_bases
CGGTTTCTGCAAGGCAGGACCGCGGGCGCTGCACGGCGCCTCCCGCAGGGACTGACAGCGCTCGGTTACCCCCTGGAGCG
AGGCTTCCAGGGGGACTTGC

Downstream 100 bases:

>100_bases
GCGCCATGCCCCAGGTGCTCGTCGTCGACGACGACCCCCACATCCGCGAGCTCCTGGTCTTCGCCCTCGAGAAGGCGAGA
TTGTCGGCCCGCGTCGCCGA

Product: ABC transporter, ATP-binding protein CydD

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MPIRLPTFRLKLAASLLLVAGADVLLFDRYPGAGVGVLSLALLAAVVATNPAILHRRLGIFALVAAAWFALLQVERATLL
GGLLFALALGVAALAPRAGEGEDALRWTRRLAVAGVKGLFGPILDLRPLRQAAGRRPGPRAPARLAAAALPVAGGAVFLG
LFAAANPLIAEAFARLRLPAIEPARLVFWGLAGAVAWTALRPRGLKPRLASRPRRIRDGARPVASTASVAASLVVFNLVF
ALQNGLDAAFLWSGARLPSDMSHAEYAHRGAYPLVATALLAGAFVLVFLRPGSATSASRPVRALLAAWIAQNLFLLASTA
LRTLEYVDAYALTRTRIAALLWMGLVAAGLALIAWRLLAGRSGRWLVNANAACAGAVLVLCSLVDLGAVAAAWNVRHARE
VGGRGVALDLCYLGRLEGAALVSLAELEQRPLPPDLADRVRWKRQEVRAGMLRRQADWRSWRWRDARRLARDAGLPGALP
PPLPGERGCDGRPRPLTPPAKPGT

Sequences:

>Translated_504_residues
MPIRLPTFRLKLAASLLLVAGADVLLFDRYPGAGVGVLSLALLAAVVATNPAILHRRLGIFALVAAAWFALLQVERATLL
GGLLFALALGVAALAPRAGEGEDALRWTRRLAVAGVKGLFGPILDLRPLRQAAGRRPGPRAPARLAAAALPVAGGAVFLG
LFAAANPLIAEAFARLRLPAIEPARLVFWGLAGAVAWTALRPRGLKPRLASRPRRIRDGARPVASTASVAASLVVFNLVF
ALQNGLDAAFLWSGARLPSDMSHAEYAHRGAYPLVATALLAGAFVLVFLRPGSATSASRPVRALLAAWIAQNLFLLASTA
LRTLEYVDAYALTRTRIAALLWMGLVAAGLALIAWRLLAGRSGRWLVNANAACAGAVLVLCSLVDLGAVAAAWNVRHARE
VGGRGVALDLCYLGRLEGAALVSLAELEQRPLPPDLADRVRWKRQEVRAGMLRRQADWRSWRWRDARRLARDAGLPGALP
PPLPGERGCDGRPRPLTPPAKPGT
>Mature_503_residues
PIRLPTFRLKLAASLLLVAGADVLLFDRYPGAGVGVLSLALLAAVVATNPAILHRRLGIFALVAAAWFALLQVERATLLG
GLLFALALGVAALAPRAGEGEDALRWTRRLAVAGVKGLFGPILDLRPLRQAAGRRPGPRAPARLAAAALPVAGGAVFLGL
FAAANPLIAEAFARLRLPAIEPARLVFWGLAGAVAWTALRPRGLKPRLASRPRRIRDGARPVASTASVAASLVVFNLVFA
LQNGLDAAFLWSGARLPSDMSHAEYAHRGAYPLVATALLAGAFVLVFLRPGSATSASRPVRALLAAWIAQNLFLLASTAL
RTLEYVDAYALTRTRIAALLWMGLVAAGLALIAWRLLAGRSGRWLVNANAACAGAVLVLCSLVDLGAVAAAWNVRHAREV
GGRGVALDLCYLGRLEGAALVSLAELEQRPLPPDLADRVRWKRQEVRAGMLRRQADWRSWRWRDARRLARDAGLPGALPP
PLPGERGCDGRPRPLTPPAKPGT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53416; Mature: 53284

Theoretical pI: Translated: 12.16; Mature: 12.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRLPTFRLKLAASLLLVAGADVLLFDRYPGAGVGVLSLALLAAVVATNPAILHRRLGI
CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
FALVAAAWFALLQVERATLLGGLLFALALGVAALAPRAGEGEDALRWTRRLAVAGVKGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
GPILDLRPLRQAAGRRPGPRAPARLAAAALPVAGGAVFLGLFAAANPLIAEAFARLRLPA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
IEPARLVFWGLAGAVAWTALRPRGLKPRLASRPRRIRDGARPVASTASVAASLVVFNLVF
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
ALQNGLDAAFLWSGARLPSDMSHAEYAHRGAYPLVATALLAGAFVLVFLRPGSATSASRP
HHHCCCCEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHH
VRALLAAWIAQNLFLLASTALRTLEYVDAYALTRTRIAALLWMGLVAAGLALIAWRLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSGRWLVNANAACAGAVLVLCSLVDLGAVAAAWNVRHAREVGGRGVALDLCYLGRLEGAA
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHH
LVSLAELEQRPLPPDLADRVRWKRQEVRAGMLRRQADWRSWRWRDARRLARDAGLPGALP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPLPGERGCDGRPRPLTPPAKPGT
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PIRLPTFRLKLAASLLLVAGADVLLFDRYPGAGVGVLSLALLAAVVATNPAILHRRLGI
CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
FALVAAAWFALLQVERATLLGGLLFALALGVAALAPRAGEGEDALRWTRRLAVAGVKGLF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
GPILDLRPLRQAAGRRPGPRAPARLAAAALPVAGGAVFLGLFAAANPLIAEAFARLRLPA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCCCC
IEPARLVFWGLAGAVAWTALRPRGLKPRLASRPRRIRDGARPVASTASVAASLVVFNLVF
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHH
ALQNGLDAAFLWSGARLPSDMSHAEYAHRGAYPLVATALLAGAFVLVFLRPGSATSASRP
HHHCCCCEEEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCCCHH
VRALLAAWIAQNLFLLASTALRTLEYVDAYALTRTRIAALLWMGLVAAGLALIAWRLLAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RSGRWLVNANAACAGAVLVLCSLVDLGAVAAAWNVRHAREVGGRGVALDLCYLGRLEGAA
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHCCCHHH
LVSLAELEQRPLPPDLADRVRWKRQEVRAGMLRRQADWRSWRWRDARRLARDAGLPGALP
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPLPGERGCDGRPRPLTPPAKPGT
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA