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The map label for this gene is yfkH [H]

Identifier: 197105285

GI number: 197105285

Start: 2040468

End: 2041571

Strand: Direct

Name: yfkH [H]

Synonym: PHZ_c1822

Alternate gene names: 197105285

Gene position: 2040468-2041571 (Clockwise)

Preceding gene: 197105284

Following gene: 197105287

Centisome position: 51.06

GC content: 71.65

Gene sequence:

>1104_bases
ATGCCCCACGCGCTTCGAAAGGCGGCCCCGTTCCTTGTGCTGGCGGGGATCGCGCTGATGCCGCGCGAGCGTCCGGCGGC
CCGGCCGGACCCGGGCGGCGGGCGGGACCGCCGTCTGAGCGAGTCGGCGCCCGATCGCCACACCACCGACCCGGCGGAGA
TCCACGCGCCGGGCCGCGGCCGGCATGCGGACGCGCCCGAGGAGATTCCGGCGCGCGGCTGGAAGGACATCCTGATCCGC
GCCGTCAAGGAGTTCGCCGACGACCAGGCCCCGCTCGTGGCGGCGGGGGTGACCTTCTACACCCTGCTCGCGCTGTTCCC
CGCGCTCGGCGCGCTCGTGGCCCTGTACGGCCTATTCGCCGACGTGGCCCAGGCGCGGGAGCACCTGGCCGCCCTGTCCG
CCGTCCTGCCGGCCGACGCGGTCCGCTTCCTGGGGGAGCAGATGGTGCGCATCTCGGCCTCCAACGAGGGCGGCCTGTCG
CTGGCCTTCGCCGGCGGCCTGCTGCTGTCGATCTGGAGCGCCAACGGGGCGACCAAGGCGATGATCACCGCCATGAACAT
CGCCTACGACGAAGATGAGAAGCGAAGTTTCGTCGCCAAGACGCTGACATCTCTCGCTTTTACGCTTGGGTTCCTGATGT
TCGGGTTGGCCGCGCTCGCGGTCATCGCGGCCCCGGCCGCGGTCGAGCCGTTCGCGGGGCCGGCCGCGGCGGCCATGATG
CGGTGGATCACCTGGCCGATCCTCGTGGCGGCCCTGGGACTAGGCCTCGCCCTCCTCTACCGGTTCGGCCCGAGCCGCGA
CCGCGTGCGCTGGCGGTGGATCAGCTGGGGCAGCGCGGCGGCCCTGATCCTCTGGCTGGCCGTTTCCGCCGCGTTCTCGA
TCTACGTCGCCAACTTCGCGGACTACGAGAAGACCTACGGCTCGTTGGGGGCGGTGATCGGCTTCCTGATGTGGCTCTAC
CTGTCGGCCCAGGTCGTCCTGCTGGGCGCCGAGCTGAACTCGGAGATCGAGCACCAGACTGTGAAGGACACGACGATCGG
CCCCCCGCAGCCGCTGGGCACGCGGGGGGCCGTGATGGCCGACACGGTGGGCGAGCCGCAGTAG

Upstream 100 bases:

>100_bases
AATGGCTGGAGGCGCAGGAGGCGTACGAGGCTCTCCGCGGCTAGCGCCGGAACCGACCGTCCGGCCCGGCTGTTGCAGCC
GCGCTGTTCCGGGAGGTCCC

Downstream 100 bases:

>100_bases
CGGCCCGCCGGTCGCGTCCGATCCTCAGGTGATGTGCTTGGGGCTGATCGGGTCCGAGCCCGGGAAGGTCTCCTCGATCG
CCTCGTCGAGCAGGGCCTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MPHALRKAAPFLVLAGIALMPRERPAARPDPGGGRDRRLSESAPDRHTTDPAEIHAPGRGRHADAPEEIPARGWKDILIR
AVKEFADDQAPLVAAGVTFYTLLALFPALGALVALYGLFADVAQAREHLAALSAVLPADAVRFLGEQMVRISASNEGGLS
LAFAGGLLLSIWSANGATKAMITAMNIAYDEDEKRSFVAKTLTSLAFTLGFLMFGLAALAVIAAPAAVEPFAGPAAAAMM
RWITWPILVAALGLGLALLYRFGPSRDRVRWRWISWGSAAALILWLAVSAAFSIYVANFADYEKTYGSLGAVIGFLMWLY
LSAQVVLLGAELNSEIEHQTVKDTTIGPPQPLGTRGAVMADTVGEPQ

Sequences:

>Translated_367_residues
MPHALRKAAPFLVLAGIALMPRERPAARPDPGGGRDRRLSESAPDRHTTDPAEIHAPGRGRHADAPEEIPARGWKDILIR
AVKEFADDQAPLVAAGVTFYTLLALFPALGALVALYGLFADVAQAREHLAALSAVLPADAVRFLGEQMVRISASNEGGLS
LAFAGGLLLSIWSANGATKAMITAMNIAYDEDEKRSFVAKTLTSLAFTLGFLMFGLAALAVIAAPAAVEPFAGPAAAAMM
RWITWPILVAALGLGLALLYRFGPSRDRVRWRWISWGSAAALILWLAVSAAFSIYVANFADYEKTYGSLGAVIGFLMWLY
LSAQVVLLGAELNSEIEHQTVKDTTIGPPQPLGTRGAVMADTVGEPQ
>Mature_366_residues
PHALRKAAPFLVLAGIALMPRERPAARPDPGGGRDRRLSESAPDRHTTDPAEIHAPGRGRHADAPEEIPARGWKDILIRA
VKEFADDQAPLVAAGVTFYTLLALFPALGALVALYGLFADVAQAREHLAALSAVLPADAVRFLGEQMVRISASNEGGLSL
AFAGGLLLSIWSANGATKAMITAMNIAYDEDEKRSFVAKTLTSLAFTLGFLMFGLAALAVIAAPAAVEPFAGPAAAAMMR
WITWPILVAALGLGLALLYRFGPSRDRVRWRWISWGSAAALILWLAVSAAFSIYVANFADYEKTYGSLGAVIGFLMWLYL
SAQVVLLGAELNSEIEHQTVKDTTIGPPQPLGTRGAVMADTVGEPQ

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 39055; Mature: 38923

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHALRKAAPFLVLAGIALMPRERPAARPDPGGGRDRRLSESAPDRHTTDPAEIHAPGRG
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCC
RHADAPEEIPARGWKDILIRAVKEFADDQAPLVAAGVTFYTLLALFPALGALVALYGLFA
CCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAQAREHLAALSAVLPADAVRFLGEQMVRISASNEGGLSLAFAGGLLLSIWSANGATKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHCCCCCHHH
MITAMNIAYDEDEKRSFVAKTLTSLAFTLGFLMFGLAALAVIAAPAAVEPFAGPAAAAMM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RWITWPILVAALGLGLALLYRFGPSRDRVRWRWISWGSAAALILWLAVSAAFSIYVANFA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
DYEKTYGSLGAVIGFLMWLYLSAQVVLLGAELNSEIEHQTVKDTTIGPPQPLGTRGAVMA
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHCCHHHHHHHCCCCCCCCCCCCCCCCEEE
DTVGEPQ
CCCCCCC
>Mature Secondary Structure 
PHALRKAAPFLVLAGIALMPRERPAARPDPGGGRDRRLSESAPDRHTTDPAEIHAPGRG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCC
RHADAPEEIPARGWKDILIRAVKEFADDQAPLVAAGVTFYTLLALFPALGALVALYGLFA
CCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVAQAREHLAALSAVLPADAVRFLGEQMVRISASNEGGLSLAFAGGLLLSIWSANGATKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEHHHHHHHHHHHCCCCCHHH
MITAMNIAYDEDEKRSFVAKTLTSLAFTLGFLMFGLAALAVIAAPAAVEPFAGPAAAAMM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
RWITWPILVAALGLGLALLYRFGPSRDRVRWRWISWGSAAALILWLAVSAAFSIYVANFA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
DYEKTYGSLGAVIGFLMWLYLSAQVVLLGAELNSEIEHQTVKDTTIGPPQPLGTRGAVMA
HHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHCCHHHHHHHCCCCCCCCCCCCCCCCEEE
DTVGEPQ
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]