| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is yfeW [C]
Identifier: 197105209
GI number: 197105209
Start: 1955405
End: 1956640
Strand: Direct
Name: yfeW [C]
Synonym: PHZ_c1746
Alternate gene names: 197105209
Gene position: 1955405-1956640 (Clockwise)
Preceding gene: 197105201
Following gene: 197105211
Centisome position: 48.93
GC content: 72.09
Gene sequence:
>1236_bases ATGCTCAGGACCCTGATCGCGCTGCTCGGCGCGGCGCTGATGCTGCTGCCTGGATCCTTCGTCGCGGCCGAGCCGGTCCG CCTCGACACCGCCCGCATCGACGAGGCTCTGGCGCAGATGGTGGCGAGCGGCCGGGCCGCGGGCGTGTCGGCCCTCGTCT GGCAGGACGGCGCCGAGCGTTACTTCGGCGCCGCCGGATTCGCCGACCGCGAGGCGGACCGGTCGATGGCGCGCGACACG CTCGTGCAGATCTACTCCATGACCAAGCCGGTGACCGGCGTCGCCCTGATGCAGCTCTGGGAACAGGGCCGCTTCGGCCT CGACGATCCGCTGGCGCAGCACCTGCCCGAGTTCGCCGCGCTGCAGGTGCTGCAGCCTAACGGGTCGCTCACCCCTCCCG CCAGACCGGTCCTTGTGCGGGACATCCTGCGCCACACCGCCGGCTTCGGCTACGGCGACGACCCGCGGTTCCGGACCGCC GACCCGCTGAATCTGCAGAACGACCTGGCGGAGGCCGGCCGCCGCATCGCGGGCCTGCCGCTCCTGTTCGAACCGGGGGC GGAGTGGCGCTACAGCGCCGCCGTCGACGTCCAGGCGCTGCTGGTCGAACGGCTGTCGGGCGTGCCGTTCGAAACCTACG TGCGCACCCATGTGCTGGACCCGCTGGGCATGCGCGAGACCGCCTGGACCCACCCGCCCGAACGCCTCGGCCGGCTCGCC GCCACCTACGTCCGCCGGAACGAGACCCTCGAGCGGCAGGACGACGCGCGGACGCGCGCGCTCAACTTCGCGCCCAAGCG GCTGACCATGGGCGGCGCCGGCCTCGCCGGGCCCATCGACGACTACATGCGCTTCGCCCGCATGCTGCTGAATGACGGTG AGCTGGAGGGGGTGCGAATCCTGCGGTCCTCGACGGTCCGGCTGATGGCGACCGATCACCTCGACCCGCGCATCGCCCGC CGCCACTTCCTGCCCAGCAAGGGCCAGGTGGGCTTCGGCTTCGATTTCGCCGTCCGCACCGCGCGGCCGAAAAGTCCGCA GGAGAATCGCGGCGCGGTGGGGGAGTTCTTCTGGGACGGCGCGCAGTCGACGCTGTTCTGGGTCGATCCCGCCAACCGCC TGGCGGCGGTGTTCTTCGTCCAGACGGCCCCGTTCGACGGGACCCTGCACCGAGACATCCGGGCCGCGGTCTACGGCCCG GACTATCAGGGTCCGCCCGGCGACGAGCGCCGCTAG
Upstream 100 bases:
>100_bases GCTTAATGGGCGGCTAACCACGCGGGACTGGTACCGGTCCCAATCCGATTGACCGCACGGCGAAGCTGCGGAACGCTCGC CGGGAAGTGGGGAGGCCATC
Downstream 100 bases:
>100_bases AGCGCCCGCAGCGCCCGGCGGCCGGCGTAGATCGCCTGGTCGCCCAGCTCCTCCTCGATGCGGAGCAGCTGGTTGTACTT GGCCGTACGGTCCGAGCGGG
Product: beta-lactamase class C
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MLRTLIALLGAALMLLPGSFVAAEPVRLDTARIDEALAQMVASGRAAGVSALVWQDGAERYFGAAGFADREADRSMARDT LVQIYSMTKPVTGVALMQLWEQGRFGLDDPLAQHLPEFAALQVLQPNGSLTPPARPVLVRDILRHTAGFGYGDDPRFRTA DPLNLQNDLAEAGRRIAGLPLLFEPGAEWRYSAAVDVQALLVERLSGVPFETYVRTHVLDPLGMRETAWTHPPERLGRLA ATYVRRNETLERQDDARTRALNFAPKRLTMGGAGLAGPIDDYMRFARMLLNDGELEGVRILRSSTVRLMATDHLDPRIAR RHFLPSKGQVGFGFDFAVRTARPKSPQENRGAVGEFFWDGAQSTLFWVDPANRLAAVFFVQTAPFDGTLHRDIRAAVYGP DYQGPPGDERR
Sequences:
>Translated_411_residues MLRTLIALLGAALMLLPGSFVAAEPVRLDTARIDEALAQMVASGRAAGVSALVWQDGAERYFGAAGFADREADRSMARDT LVQIYSMTKPVTGVALMQLWEQGRFGLDDPLAQHLPEFAALQVLQPNGSLTPPARPVLVRDILRHTAGFGYGDDPRFRTA DPLNLQNDLAEAGRRIAGLPLLFEPGAEWRYSAAVDVQALLVERLSGVPFETYVRTHVLDPLGMRETAWTHPPERLGRLA ATYVRRNETLERQDDARTRALNFAPKRLTMGGAGLAGPIDDYMRFARMLLNDGELEGVRILRSSTVRLMATDHLDPRIAR RHFLPSKGQVGFGFDFAVRTARPKSPQENRGAVGEFFWDGAQSTLFWVDPANRLAAVFFVQTAPFDGTLHRDIRAAVYGP DYQGPPGDERR >Mature_411_residues MLRTLIALLGAALMLLPGSFVAAEPVRLDTARIDEALAQMVASGRAAGVSALVWQDGAERYFGAAGFADREADRSMARDT LVQIYSMTKPVTGVALMQLWEQGRFGLDDPLAQHLPEFAALQVLQPNGSLTPPARPVLVRDILRHTAGFGYGDDPRFRTA DPLNLQNDLAEAGRRIAGLPLLFEPGAEWRYSAAVDVQALLVERLSGVPFETYVRTHVLDPLGMRETAWTHPPERLGRLA ATYVRRNETLERQDDARTRALNFAPKRLTMGGAGLAGPIDDYMRFARMLLNDGELEGVRILRSSTVRLMATDHLDPRIAR RHFLPSKGQVGFGFDFAVRTARPKSPQENRGAVGEFFWDGAQSTLFWVDPANRLAAVFFVQTAPFDGTLHRDIRAAVYGP DYQGPPGDERR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=383, Percent_Identity=26.6318537859008, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786574, Length=244, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 45389; Mature: 45389
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRTLIALLGAALMLLPGSFVAAEPVRLDTARIDEALAQMVASGRAAGVSALVWQDGAER CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH YFGAAGFADREADRSMARDTLVQIYSMTKPVTGVALMQLWEQGRFGLDDPLAQHLPEFAA HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH LQVLQPNGSLTPPARPVLVRDILRHTAGFGYGDDPRFRTADPLNLQNDLAEAGRRIAGLP EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHCCCC LLFEPGAEWRYSAAVDVQALLVERLSGVPFETYVRTHVLDPLGMRETAWTHPPERLGRLA EEECCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ATYVRRNETLERQDDARTRALNFAPKRLTMGGAGLAGPIDDYMRFARMLLNDGELEGVRI HHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH LRSSTVRLMATDHLDPRIARRHFLPSKGQVGFGFDFAVRTARPKSPQENRGAVGEFFWDG HHHCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCC AQSTLFWVDPANRLAAVFFVQTAPFDGTLHRDIRAAVYGPDYQGPPGDERR CCCEEEEECCHHHEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCCCCCCC >Mature Secondary Structure MLRTLIALLGAALMLLPGSFVAAEPVRLDTARIDEALAQMVASGRAAGVSALVWQDGAER CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHH YFGAAGFADREADRSMARDTLVQIYSMTKPVTGVALMQLWEQGRFGLDDPLAQHLPEFAA HHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH LQVLQPNGSLTPPARPVLVRDILRHTAGFGYGDDPRFRTADPLNLQNDLAEAGRRIAGLP EEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHCCCC LLFEPGAEWRYSAAVDVQALLVERLSGVPFETYVRTHVLDPLGMRETAWTHPPERLGRLA EEECCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ATYVRRNETLERQDDARTRALNFAPKRLTMGGAGLAGPIDDYMRFARMLLNDGELEGVRI HHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH LRSSTVRLMATDHLDPRIARRHFLPSKGQVGFGFDFAVRTARPKSPQENRGAVGEFFWDG HHHCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHCC AQSTLFWVDPANRLAAVFFVQTAPFDGTLHRDIRAAVYGPDYQGPPGDERR CCCEEEEECCHHHEEEEEEEEECCCCCHHHHHHHHEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]