Click here to switch to the map view.

The map label for this gene is yfhF [C]

Identifier: 197105178

GI number: 197105178

Start: 1923486

End: 1923881

Strand: Reverse

Name: yfhF [C]

Synonym: PHZ_c1715

Alternate gene names: 197105178

Gene position: 1923881-1923486 (Counterclockwise)

Preceding gene: 197105179

Following gene: 197105177

Centisome position: 48.14

GC content: 65.4

Gene sequence:

>396_bases
ATGGCGAACCTCGAAGTCACCCCCCAGCCGCGCCAGCGGCGTCCGCGTCCCAAGGTGGTCACGCTCACCGAGCGGGCGGC
CGAGCGCGTGCGCGAAATCATGGGTAAGGCGGATAAGCCCTACGCCGGCCTGCGCGTGGGCGTGAAGAACGGCGGCTGCG
CCGGCCAGGAATACGTCCTCGAATACGCAGAGACAGCCGATCCGATGGACGAGGTGGTCGAGGACAAGGGCGTGACCATC
CTGGTCGAGCCCAAGGCCGTCCTGTTCCTGATCGGTTCCGAGATCGACTACGAAGTCAGCAAGCTCTCGGCCAAGTTCGT
GTTCCACAATCCCAACGAGACCGACGCCTGCGGCTGCGGCGAGAGCGTGACCATCCAGCCGGCCAAGCTGGATTAG

Upstream 100 bases:

>100_bases
TCGACGACATCAAGTCGTGCAAGGTCGAGCTGGTGTTCGATCCGCCGTGGGACCCCTCGCGCATGTCGGACGAGGCCAAG
CTGCAGCTGAACATGTTCTG

Downstream 100 bases:

>100_bases
CGTTCCGTATCGGCGTTATGCTCCCGTCACGACGACGGGGAAGCGATCATGACCGACGACGCCGAACTCCGCCGCCTGGC
CGTGCGCCGGGCGGACATGA

Product: HesB/YadR/YfhF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MANLEVTPQPRQRRPRPKVVTLTERAAERVREIMGKADKPYAGLRVGVKNGGCAGQEYVLEYAETADPMDEVVEDKGVTI
LVEPKAVLFLIGSEIDYEVSKLSAKFVFHNPNETDACGCGESVTIQPAKLD

Sequences:

>Translated_131_residues
MANLEVTPQPRQRRPRPKVVTLTERAAERVREIMGKADKPYAGLRVGVKNGGCAGQEYVLEYAETADPMDEVVEDKGVTI
LVEPKAVLFLIGSEIDYEVSKLSAKFVFHNPNETDACGCGESVTIQPAKLD
>Mature_130_residues
ANLEVTPQPRQRRPRPKVVTLTERAAERVREIMGKADKPYAGLRVGVKNGGCAGQEYVLEYAETADPMDEVVEDKGVTIL
VEPKAVLFLIGSEIDYEVSKLSAKFVFHNPNETDACGCGESVTIQPAKLD

Specific function: Unknown

COG id: COG0316

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesB/iscA family [H]

Homologues:

Organism=Homo sapiens, GI52426768, Length=116, Percent_Identity=43.9655172413793, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1788877, Length=106, Percent_Identity=43.3962264150943, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786351, Length=104, Percent_Identity=32.6923076923077, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787974, Length=106, Percent_Identity=39.622641509434, Blast_Score=79, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI25146411, Length=115, Percent_Identity=46.0869565217391, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI193209025, Length=115, Percent_Identity=46.0869565217391, Blast_Score=106, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6323001, Length=107, Percent_Identity=40.1869158878505, Blast_Score=92, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24642263, Length=116, Percent_Identity=43.9655172413793, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000361
- InterPro:   IPR016092
- InterPro:   IPR017870 [H]

Pfam domain/function: PF01521 Fe-S_biosyn [H]

EC number: NA

Molecular weight: Translated: 14363; Mature: 14231

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANLEVTPQPRQRRPRPKVVTLTERAAERVREIMGKADKPYAGLRVGVKNGGCAGQEYVL
CCCCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH
EYAETADPMDEVVEDKGVTILVEPKAVLFLIGSEIDYEVSKLSAKFVFHNPNETDACGCG
HHHHCCCHHHHHHHCCCCEEEECCCEEEEEECCCCCCCHHHEEEEEEEECCCCCCCCCCC
ESVTIQPAKLD
CCEEEECCCCC
>Mature Secondary Structure 
ANLEVTPQPRQRRPRPKVVTLTERAAERVREIMGKADKPYAGLRVGVKNGGCAGQEYVL
CCCCCCCCHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHH
EYAETADPMDEVVEDKGVTILVEPKAVLFLIGSEIDYEVSKLSAKFVFHNPNETDACGCG
HHHHCCCHHHHHHHCCCCEEEECCCEEEEEECCCCCCCHHHEEEEEEEECCCCCCCCCCC
ESVTIQPAKLD
CCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]