| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is surA [H]
Identifier: 197105171
GI number: 197105171
Start: 1916175
End: 1917581
Strand: Direct
Name: surA [H]
Synonym: PHZ_c1708
Alternate gene names: 197105171
Gene position: 1916175-1917581 (Clockwise)
Preceding gene: 197105170
Following gene: 197105172
Centisome position: 47.95
GC content: 72.64
Gene sequence:
>1407_bases ATGGCAGGTAGAATGCCAGGCGGACTGCGCCCTACGAAGGAAACGATCTCGTCCATGAAGTCTCTTGTCACGGGCCCTGC GGCGCGGAGCGCGGCGATCGCCTGCGCCCTGCTCGCGGCAGGCTCGCCGCTGCCCGTCCTCGCCCAGGCGCCGACCCAGA GCCAGCCCGCCCCCGCGGCGCCGGCCCAGCCTGAGCCCGAGGCGGCGGCCCAACCGGCCGGCATCTCGGAATCGGTCGCC GCCGTCGTCAACGACGAGATCATCTCGACCTATGACCTCGCCCAGCGGATGCGGCTGCTGATCGCCACCTCCGGCGTCCA GCCCACCGAACAGACCCTGCCCCAGTTCCAGCGCGAGGCCCTGGTCTCGCTGGTCGACGAGCGCCTGCAGTTCCAGGAGC TCCGCCGCGTCGAGCGCGAGCAGAAGATCGACATCGTCGCCACCGACGAGGAGGTGGACGAGGAGATCGCCGACATGGCG CGGCAGAACAACATGACGCGGGAGCAGTTCCTGAGCTTCCTCGGCGCGCGGGGCATCGGGGTCGACACCCTGCGCCAGCA GATCCGCGCGCAGGTCAGCTGGGCCCGCTGGATCCGCGGCCGCTACGGCTCGCGCCTGCGCATCGGCGACGACCAGATCG CGGCCACCCAGGCGCGGCTCGAGGCGGCCGCCGCCAAGCCGCAGTACCAGATCTCTGAAGTGCTGATCGACGCCAGCCGC GTCGGCGGCATGCAGCAGGCCATGCAGGGCGCCCAGCAGCTCGTGGCCCAGATGCAGCAGGGCGCGCCCTTCCCGGCCGT CGCCCGCCAGTTCTCGGCCCTGCCCACCGCCGCCGCGGGCGGCGACGCGGGCTGGATCAGCCAGGGCGAGATGCCGACCG AGGTCGAGCAGGTGCTGGAGCAGATGCGCCCCGGCCAGCTCTCCCAGCCCATCCCGGTCCGGGACGGCGTCTACATCGTC TATCTGCGCGACAAGCGCGCGGGCGGCGGGGCGACCCTCGTCAACCTCAAGCAGGCGGCCGTGCCGCTCGCCCAGGGCGC CGACGAGGCCGAGGCCCGCGCCAAGCTCGAGGCCCTGCGGCCGAAGATCACCAGCTGCGAGACCCTGGAACAGGCCGCCG CGGGCGTCGAAGGCGTCGTGGCCGGCGACCTTGGCGAGGCCGAGGTCGCCGATCTCGCGCCCGCCTTCCGCCAGGCCGCC GAGACCCTCCAGATCGGCCAGGTGTCGGAGCCCATCCGGACCAACGCCGGGCTGCATCTCGTGGCCGTCTGCGGCCGCCG CGCCGCCGGCGAGGCGCAGGTGGACCGCGAGCAGATCGAAAACCGCCTCTACGGCCAGCAGCTCTCGATGATCGCCCGGC GGTACATGCGCGACCTGCGCAACTCGGCCACCATCGAGACGCGGTGA
Upstream 100 bases:
>100_bases GATGTGGTCTATCGCCGCGAAGACACGATCATCGGCCGTCTGCTACCCAGTGAGTCCGTCTCGGTGCGCCTAACGCTCGC CACATTGGGCGGAACATCTG
Downstream 100 bases:
>100_bases GGCCGGCACCGCTCGCCCTCACCCTCGGGGATCCCGCGGGCATCGGCCCCGAGATCGTCGTCAAGGCGTGGCGGGCGTTG CGGGCCGAGGGGCAGGCTTT
Product: peptidyl-prolyl cis-trans isomerase family protein
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase surA; PPIase surA; Rotamase surA [H]
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MAGRMPGGLRPTKETISSMKSLVTGPAARSAAIACALLAAGSPLPVLAQAPTQSQPAPAAPAQPEPEAAAQPAGISESVA AVVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREALVSLVDERLQFQELRRVEREQKIDIVATDEEVDEEIADMA RQNNMTREQFLSFLGARGIGVDTLRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASR VGGMQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLEQMRPGQLSQPIPVRDGVYIV YLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALRPKITSCETLEQAAAGVEGVVAGDLGEAEVADLAPAFRQAA ETLQIGQVSEPIRTNAGLHLVAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNSATIETR
Sequences:
>Translated_468_residues MAGRMPGGLRPTKETISSMKSLVTGPAARSAAIACALLAAGSPLPVLAQAPTQSQPAPAAPAQPEPEAAAQPAGISESVA AVVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREALVSLVDERLQFQELRRVEREQKIDIVATDEEVDEEIADMA RQNNMTREQFLSFLGARGIGVDTLRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASR VGGMQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLEQMRPGQLSQPIPVRDGVYIV YLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALRPKITSCETLEQAAAGVEGVVAGDLGEAEVADLAPAFRQAA ETLQIGQVSEPIRTNAGLHLVAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNSATIETR >Mature_467_residues AGRMPGGLRPTKETISSMKSLVTGPAARSAAIACALLAAGSPLPVLAQAPTQSQPAPAAPAQPEPEAAAQPAGISESVAA VVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREALVSLVDERLQFQELRRVEREQKIDIVATDEEVDEEIADMAR QNNMTREQFLSFLGARGIGVDTLRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASRV GGMQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLEQMRPGQLSQPIPVRDGVYIVY LRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALRPKITSCETLEQAAAGVEGVVAGDLGEAEVADLAPAFRQAAE TLQIGQVSEPIRTNAGLHLVAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNSATIETR
Specific function: Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasm. Note=Is capable of associating with the outer membrane (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PpiC domains [H]
Homologues:
Organism=Escherichia coli, GI1786238, Length=344, Percent_Identity=28.1976744186047, Blast_Score=101, Evalue=1e-22,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023034 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 50224; Mature: 50092
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRMPGGLRPTKETISSMKSLVTGPAARSAAIACALLAAGSPLPVLAQAPTQSQPAPAA CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC PAQPEPEAAAQPAGISESVAAVVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREA CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LVSLVDERLQFQELRRVEREQKIDIVATDEEVDEEIADMARQNNMTREQFLSFLGARGIG HHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC VDTLRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASR HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VGGMQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLE CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH QMRPGQLSQPIPVRDGVYIVYLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALR HCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHC PKITSCETLEQAAAGVEGVVAGDLGEAEVADLAPAFRQAAETLQIGQVSEPIRTNAGLHL CCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEE VAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNSATIETR EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure AGRMPGGLRPTKETISSMKSLVTGPAARSAAIACALLAAGSPLPVLAQAPTQSQPAPAA CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC PAQPEPEAAAQPAGISESVAAVVNDEIISTYDLAQRMRLLIATSGVQPTEQTLPQFQREA CCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH LVSLVDERLQFQELRRVEREQKIDIVATDEEVDEEIADMARQNNMTREQFLSFLGARGIG HHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC VDTLRQQIRAQVSWARWIRGRYGSRLRIGDDQIAATQARLEAAAAKPQYQISEVLIDASR HHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH VGGMQQAMQGAQQLVAQMQQGAPFPAVARQFSALPTAAAGGDAGWISQGEMPTEVEQVLE CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHH QMRPGQLSQPIPVRDGVYIVYLRDKRAGGGATLVNLKQAAVPLAQGADEAEARAKLEALR HCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHC PKITSCETLEQAAAGVEGVVAGDLGEAEVADLAPAFRQAAETLQIGQVSEPIRTNAGLHL CCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEE VAVCGRRAAGEAQVDREQIENRLYGQQLSMIARRYMRDLRNSATIETR EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 14500782 [H]