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The map label for this gene is cspD [C]

Identifier: 197105102

GI number: 197105102

Start: 1846251

End: 1846859

Strand: Reverse

Name: cspD [C]

Synonym: PHZ_c1639

Alternate gene names: 197105102

Gene position: 1846859-1846251 (Counterclockwise)

Preceding gene: 197105103

Following gene: 197105101

Centisome position: 46.21

GC content: 69.29

Gene sequence:

>609_bases
ATGTTTCGGGGGTTAGGGGCCGAGGGGCGGATGGCTGGTTTCGAATTCGAGCAGGTGGATGCGCCGGCGCCGGTGCGCAT
CACCGGCCGCGTGAAGTGGTTCGACGCGGGCAAGGGCTATGGCTTCATCGTGCCCGACGATCCGGCTCAGACGGATCTGA
AGGACGTGCTGCTGCACGTCACCAGCCTCAGGAGCTCCGGCCGCGAACATTGCCTGGAGGGCTCGCTCATCACCTGCGAC
GTCGTCCGCCGGCCCAAGGGCTGGCAGGTGGCCGAGGTGGTGGATCTGGACGAGAGCACCGCCGCGCCGCCCGAACGCGC
GCTCGGCGCCCGTCGCGAAGGCCTGGGGCTGTCGGCGATCCGGCCGCCCCGGCGCCCGCTGGAGGCCACGGGGCCGCTGG
AGCAGGCCAAGGTGAAGTGGTTCAACCGCGCCAAAGGCTACGGCTTCGTCATCCGCGACAGCCAGCCGGGCGACATCTTC
GTCCACATCGAGACGCTGCGCCGCTCGGGCATGGAGGACCTCCAGCCGGGCGAGAACGTGATGGTGCGGTTCGCCGAGGG
GCCCAAGGGGCTTGTTGTGGCCGAGATCGAAGCGTCTAGTCTGGCCTGA

Upstream 100 bases:

>100_bases
CGGAATCCCTCGATCCATCCCGCGCGCCCCGCGTGACGCGGCGATTCTCCATTGACGCCATCGCCGTTACGAGAACAGTG
TTATAGTTGGCCCAAGCCGA

Downstream 100 bases:

>100_bases
ACGCCACGCTTCGGAGCCTGTCTGTGAGTTTCGCATCCATCGGCCGACGCGGCCTCGTCGCGCTGGGGGCCGTCCCACTC
CTTGCTGGCCTCGTCCTCGC

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MFRGLGAEGRMAGFEFEQVDAPAPVRITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCD
VVRRPKGWQVAEVVDLDESTAAPPERALGARREGLGLSAIRPPRRPLEATGPLEQAKVKWFNRAKGYGFVIRDSQPGDIF
VHIETLRRSGMEDLQPGENVMVRFAEGPKGLVVAEIEASSLA

Sequences:

>Translated_202_residues
MFRGLGAEGRMAGFEFEQVDAPAPVRITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCD
VVRRPKGWQVAEVVDLDESTAAPPERALGARREGLGLSAIRPPRRPLEATGPLEQAKVKWFNRAKGYGFVIRDSQPGDIF
VHIETLRRSGMEDLQPGENVMVRFAEGPKGLVVAEIEASSLA
>Mature_202_residues
MFRGLGAEGRMAGFEFEQVDAPAPVRITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCD
VVRRPKGWQVAEVVDLDESTAAPPERALGARREGLGLSAIRPPRRPLEATGPLEQAKVKWFNRAKGYGFVIRDSQPGDIF
VHIETLRRSGMEDLQPGENVMVRFAEGPKGLVVAEIEASSLA

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22093; Mature: 22093

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRGLGAEGRMAGFEFEQVDAPAPVRITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHV
CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHH
TSLRSSGREHCLEGSLITCDVVRRPKGWQVAEVVDLDESTAAPPERALGARREGLGLSAI
HHHHHCCHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCC
RPPRRPLEATGPLEQAKVKWFNRAKGYGFVIRDSQPGDIFVHIETLRRSGMEDLQPGENV
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHHHCCCCCCCCCCCE
MVRFAEGPKGLVVAEIEASSLA
EEEECCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MFRGLGAEGRMAGFEFEQVDAPAPVRITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHV
CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHH
TSLRSSGREHCLEGSLITCDVVRRPKGWQVAEVVDLDESTAAPPERALGARREGLGLSAI
HHHHHCCHHHHHCCCEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCC
RPPRRPLEATGPLEQAKVKWFNRAKGYGFVIRDSQPGDIFVHIETLRRSGMEDLQPGENV
CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHHHCCCCCCCCCCCE
MVRFAEGPKGLVVAEIEASSLA
EEEECCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA