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The map label for this gene is yjbC [C]

Identifier: 197105098

GI number: 197105098

Start: 1843388

End: 1844206

Strand: Reverse

Name: yjbC [C]

Synonym: PHZ_c1635

Alternate gene names: 197105098

Gene position: 1844206-1843388 (Counterclockwise)

Preceding gene: 197105099

Following gene: 197105093

Centisome position: 46.15

GC content: 73.38

Gene sequence:

>819_bases
CTGCGCGGACTGACGGTGGCCTGGACCCGCCGCTACGACGAGGCCGAGCCGCAGCGCGTCAACAAATGGCTGGCGCAGAG
CGGGGTCTGCTCGCGCCGCGAGGCCGAGGCGCTGATCGCCGACGGCCTCGTCAGCATCGACGGCGAGACGATCGCCGACG
CCGGCCGCAAGATCCTGCCGGGCCAGACGCTGACCCTGGCCGACCGCGCGGCCGCCAGCCTGGGCGGCTTCACGGCGGTG
CTCAACAAGCCGGTGGGCTACGTCTCGGGCCAGCCCGAGCCGGGGCACGTCCCGGCCGTGCGGCTGCTGACCGCGGCCAA
TCTCTCGGGGGAGGGGGCGGCGCCCGACGCCAGGGCCAGCCTGCCGCCCCTCGGCCGCCTGGACGAGGACAGCCGGGGCC
TGCTGATCCTCTCGGACGACGGGGTGCTGGCCAAGGCGGTGATCGGGCCGCAGTCCGACCTCGACAAGGAGTACGTCGTC
CGCGTCGCGGGCCAGGTCGACGAGCGCAAGCTGGCCCGCCTGCGCCACGGCCTCGAACTGGACGGCCGCAAGCTGAAGCC
GGCGACGGTGTCGGTGATCCAGGGAAACACCCTGCGCTTCGTGCTGAAGGAGGGCCGCAAGCGCCAGATCCGCCGCATGT
GCGACCTCGTGGGCCTGCGCGTCGTCGACCTGCTGCGCGTACGCATCGGCCCCCTGAAGCTGGGAGACCTGCCCGAGGGG
CGCTGGCGAGTTCTCACGCCACAGGAGCGCGAGGCGATGATCCGCGCCTCTACTCCGTCCGTGACGCCCCCGGCTCGGCC
GCCACGACCACGCTCTTGA

Upstream 100 bases:

>100_bases
TGGAGGGCCGGTCCGAGATCATCACCGTCCTGACCGCGCCGCCAGACCTGGCGGCCCGCGAGCGCTCGGGCGAGGGCCAC
ATGCACGCCATGCTCGAAGC

Downstream 100 bases:

>100_bases
TGTTGACGAACTCGCGGAGGCCGAACGCCGCGAGCTCGCGCCCGAAGCCGGAATGCTTCACCCCGCCGAAGGGCAGGCGG
GGGTCGGAGCGGACGTTCTG

Product: RNA pseudouridylate synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRGLTVAWTRRYDEAEPQRVNKWLAQSGVCSRREAEALIADGLVSIDGETIADAGRKILPGQTLTLADRAAASLGGFTAV
LNKPVGYVSGQPEPGHVPAVRLLTAANLSGEGAAPDARASLPPLGRLDEDSRGLLILSDDGVLAKAVIGPQSDLDKEYVV
RVAGQVDERKLARLRHGLELDGRKLKPATVSVIQGNTLRFVLKEGRKRQIRRMCDLVGLRVVDLLRVRIGPLKLGDLPEG
RWRVLTPQEREAMIRASTPSVTPPARPPRPRS

Sequences:

>Translated_272_residues
MRGLTVAWTRRYDEAEPQRVNKWLAQSGVCSRREAEALIADGLVSIDGETIADAGRKILPGQTLTLADRAAASLGGFTAV
LNKPVGYVSGQPEPGHVPAVRLLTAANLSGEGAAPDARASLPPLGRLDEDSRGLLILSDDGVLAKAVIGPQSDLDKEYVV
RVAGQVDERKLARLRHGLELDGRKLKPATVSVIQGNTLRFVLKEGRKRQIRRMCDLVGLRVVDLLRVRIGPLKLGDLPEG
RWRVLTPQEREAMIRASTPSVTPPARPPRPRS
>Mature_272_residues
MRGLTVAWTRRYDEAEPQRVNKWLAQSGVCSRREAEALIADGLVSIDGETIADAGRKILPGQTLTLADRAAASLGGFTAV
LNKPVGYVSGQPEPGHVPAVRLLTAANLSGEGAAPDARASLPPLGRLDEDSRGLLILSDDGVLAKAVIGPQSDLDKEYVV
RVAGQVDERKLARLRHGLELDGRKLKPATVSVIQGNTLRFVLKEGRKRQIRRMCDLVGLRVVDLLRVRIGPLKLGDLPEG
RWRVLTPQEREAMIRASTPSVTPPARPPRPRS

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=236, Percent_Identity=33.0508474576271, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788510, Length=240, Percent_Identity=32.5, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787524, Length=237, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081838, Length=141, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29465; Mature: 29465

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLTVAWTRRYDEAEPQRVNKWLAQSGVCSRREAEALIADGLVSIDGETIADAGRKILP
CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCHHHHCCCEECC
GQTLTLADRAAASLGGFTAVLNKPVGYVSGQPEPGHVPAVRLLTAANLSGEGAAPDARAS
CCEEEHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHEEHHCCCCCCCCCCCCCC
LPPLGRLDEDSRGLLILSDDGVLAKAVIGPQSDLDKEYVVRVAGQVDERKLARLRHGLEL
CCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
DGRKLKPATVSVIQGNTLRFVLKEGRKRQIRRMCDLVGLRVVDLLRVRIGPLKLGDLPEG
CCCCCCCCEEEEEECCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
RWRVLTPQEREAMIRASTPSVTPPARPPRPRS
CEEEECCHHHHHEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGLTVAWTRRYDEAEPQRVNKWLAQSGVCSRREAEALIADGLVSIDGETIADAGRKILP
CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCCCHHHHCCCEECC
GQTLTLADRAAASLGGFTAVLNKPVGYVSGQPEPGHVPAVRLLTAANLSGEGAAPDARAS
CCEEEHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCHHHHEEHHCCCCCCCCCCCCCC
LPPLGRLDEDSRGLLILSDDGVLAKAVIGPQSDLDKEYVVRVAGQVDERKLARLRHGLEL
CCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC
DGRKLKPATVSVIQGNTLRFVLKEGRKRQIRRMCDLVGLRVVDLLRVRIGPLKLGDLPEG
CCCCCCCCEEEEEECCEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
RWRVLTPQEREAMIRASTPSVTPPARPPRPRS
CEEEECCHHHHHEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]