| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is yhdF [H]
Identifier: 197105095
GI number: 197105095
Start: 1840371
End: 1841138
Strand: Direct
Name: yhdF [H]
Synonym: PHZ_c1632
Alternate gene names: 197105095
Gene position: 1840371-1841138 (Clockwise)
Preceding gene: 197105094
Following gene: 197105096
Centisome position: 46.05
GC content: 68.62
Gene sequence:
>768_bases ATGTGGGACGCCCCCTACTACAAGGGCTCGGGCAAGCTGGAGGGCATGGCGGCCCTGATCACCGGCGCCGACTCCGGGAT CGGCCGGGCCGTGGCCGTGCTGTTCGCCCGGGAAGGCGCGGACGTGGCCATCGCCTACCTCGAGGAGGACGAGGACGCGC AGGTGACGAAGGCGGCGGTCGAGAAGGAAGGCCGGCGCGCCATCCTGCTGCCGGGCGACGTGGCCAACCCGGCCTATGCC GACGAGGCGGTGCGCAAGACCATCGAGGCGTTCGGCAAGATCGACATTCTGGTCAACAACGCCGCGTTCCAGGAGCACGC CAAGGACATCACCGACATCGCCTTCGACCACTTCGACCGGACGCTGAAGACCAACCTCTACGGCTATTTCAACATGGCCA AGGCGGCGGCCCCGCACATCAAGGCGGGCGGCTCGATCGTCAACTGCGGCTCGGTCACCGGCCTGCACGGCTCGAAGGAG CTGCTGGACTATTCGATGACCAAGGGCGGCATCCACGCCTTCACCCGCTCGCTGGCCGGCAGCCTGATCAAGCGGGGAAT CCGGGTGAACTGCGTCGCGCCTGGCCCCGTGTGGACGCCGCTCAACCCGGCCGACAAGCCCGACAAGATCCCGGAGTTCG GGGCCCAGACCCCCATGGGCCGGCCGGCGCAGCCCGAGGAGCTGGCCCCCGCCTTCGTTTTCCTCGCCTCGCCCCAGACG GCCAGCTACATCACCGGCGAGATCCTGCCGGTCATCGGCGGCTACTGA
Upstream 100 bases:
>100_bases CAGCGCGCCCCAGACAGGCGCCAGGGACTACCCCGTCCCGCCCCTGCCCAAGCAGGCGCTGGAGAAGCCGGGCCTCGAGG CGGACCTCGAACTGAAGCCC
Downstream 100 bases:
>100_bases GGGACGGAAGCGATCGAGGCCTGGCTCGGCGAGTTCCTGGAGGCGGAGCGGCTGCCGCCCGCCTTCGCCGGGACGGTGGA GACCGTCTGCCGGCCGCTCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MWDAPYYKGSGKLEGMAALITGADSGIGRAVAVLFAREGADVAIAYLEEDEDAQVTKAAVEKEGRRAILLPGDVANPAYA DEAVRKTIEAFGKIDILVNNAAFQEHAKDITDIAFDHFDRTLKTNLYGYFNMAKAAAPHIKAGGSIVNCGSVTGLHGSKE LLDYSMTKGGIHAFTRSLAGSLIKRGIRVNCVAPGPVWTPLNPADKPDKIPEFGAQTPMGRPAQPEELAPAFVFLASPQT ASYITGEILPVIGGY
Sequences:
>Translated_255_residues MWDAPYYKGSGKLEGMAALITGADSGIGRAVAVLFAREGADVAIAYLEEDEDAQVTKAAVEKEGRRAILLPGDVANPAYA DEAVRKTIEAFGKIDILVNNAAFQEHAKDITDIAFDHFDRTLKTNLYGYFNMAKAAAPHIKAGGSIVNCGSVTGLHGSKE LLDYSMTKGGIHAFTRSLAGSLIKRGIRVNCVAPGPVWTPLNPADKPDKIPEFGAQTPMGRPAQPEELAPAFVFLASPQT ASYITGEILPVIGGY >Mature_255_residues MWDAPYYKGSGKLEGMAALITGADSGIGRAVAVLFAREGADVAIAYLEEDEDAQVTKAAVEKEGRRAILLPGDVANPAYA DEAVRKTIEAFGKIDILVNNAAFQEHAKDITDIAFDHFDRTLKTNLYGYFNMAKAAAPHIKAGGSIVNCGSVTGLHGSKE LLDYSMTKGGIHAFTRSLAGSLIKRGIRVNCVAPGPVWTPLNPADKPDKIPEFGAQTPMGRPAQPEELAPAFVFLASPQT ASYITGEILPVIGGY
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=35.2422907488987, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI40254992, Length=238, Percent_Identity=35.2941176470588, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI32483357, Length=265, Percent_Identity=32.0754716981132, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=32.8125, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI19923817, Length=266, Percent_Identity=32.3308270676692, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI66933014, Length=261, Percent_Identity=31.8007662835249, Blast_Score=94, Evalue=8e-20, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=31.1740890688259, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=31.4285714285714, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=28.957528957529, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=27.2357723577236, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=26.5625, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI4504505, Length=232, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=31.7919075144509, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI126723750, Length=249, Percent_Identity=28.9156626506024, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI20149619, Length=258, Percent_Identity=24.8062015503876, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40254986, Length=195, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=26.6409266409266, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=46.6135458167331, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=34.6613545816733, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=36.9918699186992, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.4262295081967, Blast_Score=127, Evalue=1e-30, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=36.9649805447471, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1789208, Length=254, Percent_Identity=33.8582677165354, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=32, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=30.7692307692308, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=30.5220883534137, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI2367365, Length=246, Percent_Identity=30.8943089430894, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=30.4347826086957, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=25.390625, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17559104, Length=255, Percent_Identity=38.4313725490196, Blast_Score=142, Evalue=1e-34, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=34.6007604562738, Blast_Score=138, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=37.4517374517375, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=35.1145038167939, Blast_Score=133, Evalue=7e-32, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=35.1145038167939, Blast_Score=133, Evalue=8e-32, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=36.2934362934363, Blast_Score=130, Evalue=1e-30, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=34.3396226415094, Blast_Score=128, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=35.8490566037736, Blast_Score=128, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=35.361216730038, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=33.8461538461538, Blast_Score=127, Evalue=4e-30, Organism=Caenorhabditis elegans, GI17551412, Length=254, Percent_Identity=35.0393700787402, Blast_Score=127, Evalue=6e-30, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=33.2, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=33.4615384615385, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.7935222672065, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=30.2681992337165, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560332, Length=258, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=31.9066147859922, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.3492063492063, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=31.7269076305221, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=32.046332046332, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17538486, Length=257, Percent_Identity=32.295719844358, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=32.2834645669291, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=29.8804780876494, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=34.2412451361868, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=30.4347826086957, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.8537549407115, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=33.739837398374, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI212645366, Length=252, Percent_Identity=30.1587301587302, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=30.8, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=33.6898395721925, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=30.0395256916996, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193207185, Length=144, Percent_Identity=32.6388888888889, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17567345, Length=239, Percent_Identity=25.5230125523013, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17568967, Length=217, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=27.363184079602, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508895, Length=189, Percent_Identity=29.6296296296296, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203117, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=29.296875, Blast_Score=87, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=207, Percent_Identity=31.8840579710145, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=266, Percent_Identity=25.187969924812, Blast_Score=69, Evalue=8e-13, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=36.8421052631579, Blast_Score=140, Evalue=9e-34, Organism=Drosophila melanogaster, GI21357041, Length=243, Percent_Identity=34.5679012345679, Blast_Score=124, Evalue=8e-29, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.5381526104418, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI28571526, Length=243, Percent_Identity=34.9794238683128, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.4, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36.4, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=31.5789473684211, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI21358495, Length=200, Percent_Identity=30.5, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI17737361, Length=238, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24643142, Length=253, Percent_Identity=32.8063241106719, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24665243, Length=196, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI221331218, Length=196, Percent_Identity=31.6326530612245, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=27.5510204081633, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24665247, Length=197, Percent_Identity=31.9796954314721, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI221331216, Length=197, Percent_Identity=31.9796954314721, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=27.1794871794872, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27064; Mature: 27064
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWDAPYYKGSGKLEGMAALITGADSGIGRAVAVLFAREGADVAIAYLEEDEDAQVTKAAV CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH EKEGRRAILLPGDVANPAYADEAVRKTIEAFGKIDILVNNAAFQEHAKDITDIAFDHFDR HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHH TLKTNLYGYFNMAKAAAPHIKAGGSIVNCGSVTGLHGSKELLDYSMTKGGIHAFTRSLAG HHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH SLIKRGIRVNCVAPGPVWTPLNPADKPDKIPEFGAQTPMGRPAQPEELAPAFVFLASPQT HHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCC ASYITGEILPVIGGY CHHHCCCHHHHCCCC >Mature Secondary Structure MWDAPYYKGSGKLEGMAALITGADSGIGRAVAVLFAREGADVAIAYLEEDEDAQVTKAAV CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH EKEGRRAILLPGDVANPAYADEAVRKTIEAFGKIDILVNNAAFQEHAKDITDIAFDHFDR HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHH TLKTNLYGYFNMAKAAAPHIKAGGSIVNCGSVTGLHGSKELLDYSMTKGGIHAFTRSLAG HHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH SLIKRGIRVNCVAPGPVWTPLNPADKPDKIPEFGAQTPMGRPAQPEELAPAFVFLASPQT HHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEECCCC ASYITGEILPVIGGY CHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]