| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is recG [H]
Identifier: 197105084
GI number: 197105084
Start: 1826902
End: 1828977
Strand: Direct
Name: recG [H]
Synonym: PHZ_c1621
Alternate gene names: 197105084
Gene position: 1826902-1828977 (Clockwise)
Preceding gene: 197105081
Following gene: 197105090
Centisome position: 45.72
GC content: 73.51
Gene sequence:
>2076_bases ATGCGGCCGGAGATTCTGTTCCCGCTGTTTGCGCCGATAACCTCCTTGAAGGGGGTGGGCCCGCGCGTGGCCCCGCTGCT GGAGAAGGTGGCGGGCCCGATCGTGCGCGACGTGTTGTGGCTGAAGCCGCACTCGCTGATCCGCCGCACGCCCGCGGTGC TGTCGGCCGCCCGCGACGGCGAGACCATGACCTTCGAGGTGGCGATCCACGGCTATCAGGCGCCGCGGACCAAGGCCCAG CCGTGGCGGGTGCAGGTGACCGACCCCACCGGCTTCATGACCCTGGTGTTCTTCGGCCGCTACGGCGACCAGCTCGCCCA GCGCCATCCGGTGGGCGCGAGAAGGATCGTCTCGGGCAAGGTCGAGGAGAGCAGCTTCGGCCGGCAGATGGTCCATCCCG ACTACATCCTGCCGCCCGAGAAGGCCGGCGAGATTCCCGAGCTCGAGGCGGTATATCCGGCGACCGAAGGCCTGCCCGCG CGCCGGGTGCGCGGCTTCGTGCTCGAGGCGCTGGAGCGCGCGCCCGAGCTGCCGGAATGGCAGGACCCGGCGTTCCTGCG CCAGGAGCAGTTCCCCGCCTGGCGCGCGGCGATGGAGCGCCTGCACAATCCGCAGAGCGAGGCCGACCTGTCGCTGCTGA GCCCGCACCGGCGACGGCTGGCCTTCGACGAGCTGCTGGCGCACCAGCTGGCCATGGCGCAGCGCAAGGCGGCGCGCCGG CGCGAGCCCGCCGCCAGGGTCGCCGCGAGCGAGACGGCCGAGAAGATCCGCGCGGACCTGCCCTTTCGGTTCACCGGAGC CCAGGAGCGCGCCCTGGCCGAGATCCGCGCCGATCTTTCCGCCGGCGAGCGGATGAGCCGGCTGGTCCAGGGGGACGTCG GCTCGGGCAAGACGGTGGTGGCGATGTGCGCCATGGCGGACGTGGCGGCCAGCGGCGGCCAGTCGGCCCTGATGGCCCCG ACCGAAATCCTGGCCCGGCAGCACTACGAGACCATCTCGGGGCCCCTGGCCGCGCATGGCGTGGGAACCGTCCTGCTGAC CGGCCGCGACAAGGGGGCGGCGCGCCGGGAGAAGCTGGCGGCCCTGGCCTCGGGCGAGGCCAGGGTGGCGGTGGGCACCC ACGCGCTCTTTCAGGACGAGGTGGCGTTCCAGAAGCTGCAGCTGGTGGTCATCGACGAGCAGCACCGGTTCGGCGTCGCC GAGCGCCAGCGGCTGCAGGCCAAGGGCGAGGCCACCCACCTGATCGCCATGTCGGCCACGCCGATCCCGCGCACGCTGGA GCTGACCGTCTACGGCGACCTCGACGTCAGCCGGATCGACGAAAAGCCCCCTGGCCGCACGCCGGTGGCCACCCGCGCCG CGCCGATGACCCGGGCGCACGAGGTGGAGGCCCGCCTGCGCGAGGCGGTGCAGGGCGGCGCCCAGGCGTTCTGGATCTGC CCGCTGGTCTCGGAGTCGGAGGCCACCGACCTGGCCGCCGCCGAGCGCCGGGCCGCCGAGCTGACCGAGCGCATCGGCCC CAGCGTGGGCCTGGTCCACGGCCGCCTGCCGCCCGCCGCCAAGGACGCGGTGATGGCGGAGTTCGCCGAGGGGCGGCTCT CCGTCCTCGTCGCCACCACGGTGGTCGAGGTGGGCGTCAACGTGCCCAACGCCACCATCATGGTCATCGAGCAGGCCGAG CGCTTCGGCCTGGCCCAGCTCCACCAGCTCCGGGGCCGGGTCGGGCGCGGACGGCGCGAGAGCGCCTGCGTGCTGCTGTA CGACCCGCCGCTGTCGGAGACCGCGCAGCAGCGGCTGGACATCCTGCGTCGCACCGACGACGGCTTCGTCATCGCCGAGA AGGACCTGGAGCTGCGCGGCGGCGGCGACGCCCTGGGCCTGCGCCAGTCCGGCTTCCCGGACTACGCCTTCGCCGACCCC ATCGCCCACCGCGACCTGATCGCCGCCGCCGGCGACGACGCGCGGCTCATCGTGATGCGCGACCCCGAGCTCGCCGGCGA GCGCGGCAAGGCCCTGCAGGTGCTGCAGGAGCTGTTCGACTGGAAGGCGAACCTCGGGCTGAGGGACGCCGGCTAG
Upstream 100 bases:
>100_bases CGCAGCTTCAGCTTCTTCTGCCGTGGATCATCTTCGGTCATCAGGAGGTCGCGGATATAGAGCCCCCCTCGCTCCGGCGC CAGTCAGGTATGTTGCAATC
Downstream 100 bases:
>100_bases ACCCGCACCATCCGCTTGCCGCGGTTCTCGCCGTGGAGCAGGCCGACGAGCGCCTGGGGCAGGTTCTCGAAGCCGTCGAT GACGTCCTCCTGCACCTTGA
Product: ATP-dependent DNA helicase RecG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 691; Mature: 691
Protein sequence:
>691_residues MRPEILFPLFAPITSLKGVGPRVAPLLEKVAGPIVRDVLWLKPHSLIRRTPAVLSAARDGETMTFEVAIHGYQAPRTKAQ PWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVGARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPA RRVRGFVLEALERAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAMAQRKAARR REPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQGDVGSGKTVVAMCAMADVAASGGQSALMAP TEILARQHYETISGPLAAHGVGTVLLTGRDKGAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVA ERQRLQAKGEATHLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQGGAQAFWIC PLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEGRLSVLVATTVVEVGVNVPNATIMVIEQAE RFGLAQLHQLRGRVGRGRRESACVLLYDPPLSETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADP IAHRDLIAAAGDDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG
Sequences:
>Translated_691_residues MRPEILFPLFAPITSLKGVGPRVAPLLEKVAGPIVRDVLWLKPHSLIRRTPAVLSAARDGETMTFEVAIHGYQAPRTKAQ PWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVGARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPA RRVRGFVLEALERAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAMAQRKAARR REPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQGDVGSGKTVVAMCAMADVAASGGQSALMAP TEILARQHYETISGPLAAHGVGTVLLTGRDKGAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVA ERQRLQAKGEATHLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQGGAQAFWIC PLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEGRLSVLVATTVVEVGVNVPNATIMVIEQAE RFGLAQLHQLRGRVGRGRRESACVLLYDPPLSETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADP IAHRDLIAAAGDDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG >Mature_691_residues MRPEILFPLFAPITSLKGVGPRVAPLLEKVAGPIVRDVLWLKPHSLIRRTPAVLSAARDGETMTFEVAIHGYQAPRTKAQ PWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVGARRIVSGKVEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPA RRVRGFVLEALERAPELPEWQDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAMAQRKAARR REPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQGDVGSGKTVVAMCAMADVAASGGQSALMAP TEILARQHYETISGPLAAHGVGTVLLTGRDKGAARREKLAALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVA ERQRLQAKGEATHLIAMSATPIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQGGAQAFWIC PLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEGRLSVLVATTVVEVGVNVPNATIMVIEQAE RFGLAQLHQLRGRVGRGRRESACVLLYDPPLSETAQQRLDILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADP IAHRDLIAAAGDDARLIVMRDPELAGERGKALQVLQELFDWKANLGLRDAG
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=680, Percent_Identity=43.0882352941177, Blast_Score=456, Evalue=1e-129, Organism=Escherichia coli, GI1787357, Length=377, Percent_Identity=36.8700265251989, Blast_Score=232, Evalue=8e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 75384; Mature: 75384
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPEILFPLFAPITSLKGVGPRVAPLLEKVAGPIVRDVLWLKPHSLIRRTPAVLSAARDG CCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHCCCC ETMTFEVAIHGYQAPRTKAQPWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVGARRIVSGK CEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCC VEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPARRVRGFVLEALERAPELPEW CCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC QDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAMAQRKAARR CCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH REPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQGDVGSGKTVV CCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH AMCAMADVAASGGQSALMAPTEILARQHYETISGPLAAHGVGTVLLTGRDKGAARREKLA HHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHH ALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVAERQRLQAKGEATHLIAMSAT HHHCCCCEEEECHHHHHHHHHHHHHEEEEEECCCHHCCHHHHHHHHHCCCCEEEEEEECC PIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQGGAQAFWIC CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE PLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEGRLSVLVATT EECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEHHHHH VVEVGVNVPNATIMVIEQAERFGLAQLHQLRGRVGRGRRESACVLLYDPPLSETAQQRLD HHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH ILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADPIAHRDLIAAAGDDARLIVMR HHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHEECCCCEEEEEEE DPELAGERGKALQVLQELFDWKANLGLRDAG CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRPEILFPLFAPITSLKGVGPRVAPLLEKVAGPIVRDVLWLKPHSLIRRTPAVLSAARDG CCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHCCCC ETMTFEVAIHGYQAPRTKAQPWRVQVTDPTGFMTLVFFGRYGDQLAQRHPVGARRIVSGK CEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCCHHHHCCC VEESSFGRQMVHPDYILPPEKAGEIPELEAVYPATEGLPARRVRGFVLEALERAPELPEW CCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC QDPAFLRQEQFPAWRAAMERLHNPQSEADLSLLSPHRRRLAFDELLAHQLAMAQRKAARR CCCHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH REPAARVAASETAEKIRADLPFRFTGAQERALAEIRADLSAGERMSRLVQGDVGSGKTVV CCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH AMCAMADVAASGGQSALMAPTEILARQHYETISGPLAAHGVGTVLLTGRDKGAARREKLA HHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHH ALASGEARVAVGTHALFQDEVAFQKLQLVVIDEQHRFGVAERQRLQAKGEATHLIAMSAT HHHCCCCEEEECHHHHHHHHHHHHHEEEEEECCCHHCCHHHHHHHHHCCCCEEEEEEECC PIPRTLELTVYGDLDVSRIDEKPPGRTPVATRAAPMTRAHEVEARLREAVQGGAQAFWIC CCCCEEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE PLVSESEATDLAAAERRAAELTERIGPSVGLVHGRLPPAAKDAVMAEFAEGRLSVLVATT EECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEHHHHH VVEVGVNVPNATIMVIEQAERFGLAQLHQLRGRVGRGRRESACVLLYDPPLSETAQQRLD HHHHCCCCCCCEEEEEECHHHCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH ILRRTDDGFVIAEKDLELRGGGDALGLRQSGFPDYAFADPIAHRDLIAAAGDDARLIVMR HHHCCCCCEEEEECCEEECCCCCCCCCCCCCCCCCHHCCCHHHHHHHEECCCCEEEEEEE DPELAGERGKALQVLQELFDWKANLGLRDAG CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]