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The map label for this gene is yfdE [H]

Identifier: 197105079

GI number: 197105079

Start: 1819689

End: 1820804

Strand: Reverse

Name: yfdE [H]

Synonym: PHZ_c1616

Alternate gene names: 197105079

Gene position: 1820804-1819689 (Counterclockwise)

Preceding gene: 197105080

Following gene: 197105078

Centisome position: 45.56

GC content: 71.77

Gene sequence:

>1116_bases
ATGCGTCAGGGACCGCTCACCGGCCTGAAGATCGTCGAGTTCGCCGGCATCGGGCCGGGCCCCTTCTGCGGCATGCTGCT
GTCGGACCTGGGCGCCGACGTCATCCGCATCGACCGCAAGGGCGGGCGAGGGGGCGCGCCGTCGGACATCACCGCCCGCG
GCCGCCGATCGGTGGCGCTGGACCTGAAGTCGCCCGCCGCCGTCGAGGCCTGCCTGAAGCTCATGGAGACGGCCGACGCG
GTGTTCGAGGGCTTCCGTCCCGGGGTCATGGAGCGCCTGGGCCTCGGCCCCGACGTGGCGCTGAAGCGCAATCCGAAGCT
GGTCTACGGCCGCATGACCGGCTGGGGCCAGACCGGCCCCTACGCCCACGCCGCCGGCCACGACATGAACTACATCGCCA
TCACCGGCGCGCTGCACGCCATCGGCACGAAGGACAAGCCCGTCCCGCCGCTGAACCTGGTCGGCGACTTCGGGGGCGGG
GCCCTGTACCTGGCCTTCGGCCTGCTGGCCGGGGTCATCCAGGCCCGCGAGACCGGCAAGGGCCAGGTCGTCGACTGCGC
CATGAGCGACGGGGCCGCCTCGCTGATGGCCATGTTCTACGGCTTCAAGGCCTCGGGCATGTGGACCGAGGAGCGGCGCG
CCAACCTGCTCGACGGCGGCGCGCACTTCTACGACACCTACCAGTGCTCGGACGGCAAGTGGGTGTCGATCGGCTCGATC
GAGCCGCAGTTCTACGCCCTGCTGCTCGAGAAGACCGGCATCACCGACCCCGACTTCCAGCGCCAGATGGACAAGGCCGC
CTGGCCGATGCTACGCGAGAAGCTGGCCGCCGTGATCGCCACCAGGACCCGCGACGAATGGTGCGCCCTGATGGAGGCCA
CCGACGTCTGCTTCGCCCCGGTCCTCGACCTGGACGAGGCGCCGAAGCACGCCCACAACGCCGCCCGCCAGACCTTCGTC
GAGGTCGCCGGCGTCACCCAGCCGGCGCCCGCGCCCCGCTTCTCGGCCACGCCCGGCGCGATCCAGAGCCCGCCGCCGCA
GGTGGGCGCGCACACCCGGGAGGCGCTCTCCGAGTGGGGCTTCACCGACGCCGAGATCGAGGCGCTGGGAAGCTGA

Upstream 100 bases:

>100_bases
CCGTCGACGACGGACAGTCGCTGCCCGGCGGCGGCTGAGGCGCTTGGCTGACGGCGCGTCAGGATTCGTAAGACCATCGC
CGAGAACGAGGAGGAAGCGC

Downstream 100 bases:

>100_bases
AGGCCGCGTTCAGGCTGGGTTCAGCCGCCCGGAGCCATCTTGCGCATCGGTCGGTCGCCGCGCTCTCCCGTCCCTCGAAG
CGGCGGACGATCCGGATGGA

Product: predicted acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRQGPLTGLKIVEFAGIGPGPFCGMLLSDLGADVIRIDRKGGRGGAPSDITARGRRSVALDLKSPAAVEACLKLMETADA
VFEGFRPGVMERLGLGPDVALKRNPKLVYGRMTGWGQTGPYAHAAGHDMNYIAITGALHAIGTKDKPVPPLNLVGDFGGG
ALYLAFGLLAGVIQARETGKGQVVDCAMSDGAASLMAMFYGFKASGMWTEERRANLLDGGAHFYDTYQCSDGKWVSIGSI
EPQFYALLLEKTGITDPDFQRQMDKAAWPMLREKLAAVIATRTRDEWCALMEATDVCFAPVLDLDEAPKHAHNAARQTFV
EVAGVTQPAPAPRFSATPGAIQSPPPQVGAHTREALSEWGFTDAEIEALGS

Sequences:

>Translated_371_residues
MRQGPLTGLKIVEFAGIGPGPFCGMLLSDLGADVIRIDRKGGRGGAPSDITARGRRSVALDLKSPAAVEACLKLMETADA
VFEGFRPGVMERLGLGPDVALKRNPKLVYGRMTGWGQTGPYAHAAGHDMNYIAITGALHAIGTKDKPVPPLNLVGDFGGG
ALYLAFGLLAGVIQARETGKGQVVDCAMSDGAASLMAMFYGFKASGMWTEERRANLLDGGAHFYDTYQCSDGKWVSIGSI
EPQFYALLLEKTGITDPDFQRQMDKAAWPMLREKLAAVIATRTRDEWCALMEATDVCFAPVLDLDEAPKHAHNAARQTFV
EVAGVTQPAPAPRFSATPGAIQSPPPQVGAHTREALSEWGFTDAEIEALGS
>Mature_371_residues
MRQGPLTGLKIVEFAGIGPGPFCGMLLSDLGADVIRIDRKGGRGGAPSDITARGRRSVALDLKSPAAVEACLKLMETADA
VFEGFRPGVMERLGLGPDVALKRNPKLVYGRMTGWGQTGPYAHAAGHDMNYIAITGALHAIGTKDKPVPPLNLVGDFGGG
ALYLAFGLLAGVIQARETGKGQVVDCAMSDGAASLMAMFYGFKASGMWTEERRANLLDGGAHFYDTYQCSDGKWVSIGSI
EPQFYALLLEKTGITDPDFQRQMDKAAWPMLREKLAAVIATRTRDEWCALMEATDVCFAPVLDLDEAPKHAHNAARQTFV
EVAGVTQPAPAPRFSATPGAIQSPPPQVGAHTREALSEWGFTDAEIEALGS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=373, Percent_Identity=42.627345844504, Blast_Score=319, Evalue=3e-87,
Organism=Homo sapiens, GI266456254, Length=373, Percent_Identity=42.627345844504, Blast_Score=318, Evalue=4e-87,
Organism=Homo sapiens, GI266458393, Length=251, Percent_Identity=44.2231075697211, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI266458397, Length=248, Percent_Identity=44.3548387096774, Blast_Score=234, Evalue=8e-62,
Organism=Homo sapiens, GI300863128, Length=378, Percent_Identity=27.5132275132275, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=44.9275362318841, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=44.9275362318841, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI300863124, Length=404, Percent_Identity=26.2376237623762, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI13376042, Length=404, Percent_Identity=24.2574257425743, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI300863126, Length=377, Percent_Identity=23.8726790450928, Blast_Score=106, Evalue=4e-23,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=27.1186440677966, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786222, Length=398, Percent_Identity=28.894472361809, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788717, Length=421, Percent_Identity=25.8907363420428, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=332, Percent_Identity=33.1325301204819, Blast_Score=211, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI115535051, Length=335, Percent_Identity=34.0298507462687, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=338, Percent_Identity=40.2366863905325, Blast_Score=284, Evalue=7e-77,
Organism=Drosophila melanogaster, GI24648431, Length=385, Percent_Identity=27.2727272727273, Blast_Score=128, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39494; Mature: 39494

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQGPLTGLKIVEFAGIGPGPFCGMLLSDLGADVIRIDRKGGRGGAPSDITARGRRSVAL
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
DLKSPAAVEACLKLMETADAVFEGFRPGVMERLGLGPDVALKRNPKLVYGRMTGWGQTGP
ECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEECCCCCEEEEECCCCCCCCC
YAHAAGHDMNYIAITGALHAIGTKDKPVPPLNLVGDFGGGALYLAFGLLAGVIQARETGK
CCCCCCCCCCEEEEECHHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCC
GQVVDCAMSDGAASLMAMFYGFKASGMWTEERRANLLDGGAHFYDTYQCSDGKWVSIGSI
CCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCC
EPQFYALLLEKTGITDPDFQRQMDKAAWPMLREKLAAVIATRTRDEWCALMEATDVCFAP
CHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VLDLDEAPKHAHNAARQTFVEVAGVTQPAPAPRFSATPGAIQSPPPQVGAHTREALSEWG
HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
FTDAEIEALGS
CCCHHHHCCCC
>Mature Secondary Structure
MRQGPLTGLKIVEFAGIGPGPFCGMLLSDLGADVIRIDRKGGRGGAPSDITARGRRSVAL
CCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEE
DLKSPAAVEACLKLMETADAVFEGFRPGVMERLGLGPDVALKRNPKLVYGRMTGWGQTGP
ECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEECCCCCEEEEECCCCCCCCC
YAHAAGHDMNYIAITGALHAIGTKDKPVPPLNLVGDFGGGALYLAFGLLAGVIQARETGK
CCCCCCCCCCEEEEECHHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCC
GQVVDCAMSDGAASLMAMFYGFKASGMWTEERRANLLDGGAHFYDTYQCSDGKWVSIGSI
CCEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCEEEECCC
EPQFYALLLEKTGITDPDFQRQMDKAAWPMLREKLAAVIATRTRDEWCALMEATDVCFAP
CHHHHHEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VLDLDEAPKHAHNAARQTFVEVAGVTQPAPAPRFSATPGAIQSPPPQVGAHTREALSEWG
HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
FTDAEIEALGS
CCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]