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The map label for this gene is rlpA [H]

Identifier: 197105069

GI number: 197105069

Start: 1810602

End: 1811711

Strand: Reverse

Name: rlpA [H]

Synonym: PHZ_c1606

Alternate gene names: 197105069

Gene position: 1811711-1810602 (Counterclockwise)

Preceding gene: 197105073

Following gene: 197105068

Centisome position: 45.34

GC content: 75.5

Gene sequence:

>1110_bases
ATAGCAGGGCGGGGCTGGGCGCTCCACAGCAACCCTCCGTTAACCGTGCCGCAAGCGTTCGGCGGCAAGCTGCCGGCAAG
CCGTTCCGAAGGGGGAGACATGCCGGCGACCCGCGCGTTCCACCTGGCCGCCGTGCTCCTGGCGGGCGTCTCGCTCGCCG
CCTGCGCCACGCCCCGCTACGCGGCCGGCCCCGGAGGCAAGGCCCCAGGCGGGAAGGGCTCCGCCGCGAAGGCGCCCTCG
GGCGCCGGCGGGACCTACAAGGTCGGCAAGCCCTATCAGGTCGGCGGGATCTGGTACGTGCCGCGCGAGCAGCCCGACTA
CGACAAGACCGGGATCGCCTCCTGGTACGGCGAGGCCTTCCATCTCAAGTCCACGGCCAACGGCGAGCGGTTCGACATGA
ACCTGCTCTCGGCCGCCCACACGACCCTGCCGCTGCCCTCGATCGTCGAGGTCACCAACCTCGAGAACGGCCGCCGGCTG
CAGGTGCGGGTGAACGACCGCGGCCCGTTCGTCGGCAACCGCATCATCGACCTGTCCCGCGAGGCGGCCCGCGAGCTTGG
CTTCGAGCGCCAGGGGATCGCCAGGGTGCGGGTCCGCTACGTCGGGCCGGCGCCGCTGCTCGGCCGCGAGGCTGGCGTGC
GCTACGCCTCGGCCAGGCCGGCCGACCCGCCGCCCCGGGTGGTGGAGACCCGCTGGGACGAGCTGATGGAGATCTCGGCC
GGAGGACCGGCGGCTGCCGCTCAAACCCCCACGCCGCCCCCGACGGAGGTGGAGTCCCAGCCGCTGCCCGCGGCCGCGCC
GCCCCCGGTGCAGGCGAGTCCGATCGCCGCGGCGCCGGCTCCCCCTCTGGCGTCCGCGCCGCCCCCCGCCGTCCTGCCGG
CGGGCCTGCACGTCCAGATCGGCGCCTTCTCCAGCGAGGCCAACGCCCAGCGGGCCGCGGCCCAGGTCGCGGCCGCCGGG
ACCGCCAGGGTCCAGCCGATCGAGCGCGGCGGGACGACCCTCTACCGCGTCACCTTGCCCGCGCCGGCCGACGAGGCGGG
GGCCTACGCCCTGCGCGACCAGGTGGCCGCGTTCGGCTTCGCCGACGCCCGCGTCGTTCAGGCCTTCTAG

Upstream 100 bases:

>100_bases
GCGGATGGGGTGGGATTCGAACCCACGGTAGGCTTGCACCTACGGCGGTTTTCAAGACCGCTGCCTTAAACCACTCGGCC
ACCCATCCGGGGCGCCGCCT

Downstream 100 bases:

>100_bases
ACTTCTGGGCCGAACGGGGCATTTTGGCCCCGTGGCGCGCGGGCGGTTCATCACATTCGAGGGCGGCGAGGGGGCCGGCA
AGTCCACCCAGGTGAAGCGT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MAGRGWALHSNPPLTVPQAFGGKLPASRSEGGDMPATRAFHLAAVLLAGVSLAACATPRYAAGPGGKAPGGKGSAAKAPS
GAGGTYKVGKPYQVGGIWYVPREQPDYDKTGIASWYGEAFHLKSTANGERFDMNLLSAAHTTLPLPSIVEVTNLENGRRL
QVRVNDRGPFVGNRIIDLSREAARELGFERQGIARVRVRYVGPAPLLGREAGVRYASARPADPPPRVVETRWDELMEISA
GGPAAAAQTPTPPPTEVESQPLPAAAPPPVQASPIAAAPAPPLASAPPPAVLPAGLHVQIGAFSSEANAQRAAAQVAAAG
TARVQPIERGGTTLYRVTLPAPADEAGAYALRDQVAAFGFADARVVQAF

Sequences:

>Translated_369_residues
MAGRGWALHSNPPLTVPQAFGGKLPASRSEGGDMPATRAFHLAAVLLAGVSLAACATPRYAAGPGGKAPGGKGSAAKAPS
GAGGTYKVGKPYQVGGIWYVPREQPDYDKTGIASWYGEAFHLKSTANGERFDMNLLSAAHTTLPLPSIVEVTNLENGRRL
QVRVNDRGPFVGNRIIDLSREAARELGFERQGIARVRVRYVGPAPLLGREAGVRYASARPADPPPRVVETRWDELMEISA
GGPAAAAQTPTPPPTEVESQPLPAAAPPPVQASPIAAAPAPPLASAPPPAVLPAGLHVQIGAFSSEANAQRAAAQVAAAG
TARVQPIERGGTTLYRVTLPAPADEAGAYALRDQVAAFGFADARVVQAF
>Mature_368_residues
AGRGWALHSNPPLTVPQAFGGKLPASRSEGGDMPATRAFHLAAVLLAGVSLAACATPRYAAGPGGKAPGGKGSAAKAPSG
AGGTYKVGKPYQVGGIWYVPREQPDYDKTGIASWYGEAFHLKSTANGERFDMNLLSAAHTTLPLPSIVEVTNLENGRRLQ
VRVNDRGPFVGNRIIDLSREAARELGFERQGIARVRVRYVGPAPLLGREAGVRYASARPADPPPRVVETRWDELMEISAG
GPAAAAQTPTPPPTEVESQPLPAAAPPPVQASPIAAAPAPPLASAPPPAVLPAGLHVQIGAFSSEANAQRAAAQVAAAGT
ARVQPIERGGTTLYRVTLPAPADEAGAYALRDQVAAFGFADARVVQAF

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=109, Percent_Identity=41.2844036697248, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 38120; Mature: 37989

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRGWALHSNPPLTVPQAFGGKLPASRSEGGDMPATRAFHLAAVLLAGVSLAACATPRY
CCCCCCEECCCCCEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
AAGPGGKAPGGKGSAAKAPSGAGGTYKVGKPYQVGGIWYVPREQPDYDKTGIASWYGEAF
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCEEEECCCCCCCCCCCHHHHCCCEE
HLKSTANGERFDMNLLSAAHTTLPLPSIVEVTNLENGRRLQVRVNDRGPFVGNRIIDLSR
EEECCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHH
EAARELGFERQGIARVRVRYVGPAPLLGREAGVRYASARPADPPPRVVETRWDELMEISA
HHHHHCCCCCCCCEEEEEEEECCCCCCCHHHCCEECCCCCCCCCCHHHHHHHHHHHEECC
GGPAAAAQTPTPPPTEVESQPLPAAAPPPVQASPIAAAPAPPLASAPPPAVLPAGLHVQI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEE
GAFSSEANAQRAAAQVAAAGTARVQPIERGGTTLYRVTLPAPADEAGAYALRDQVAAFGF
ECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCHHCHHHHHHHHHHHCC
ADARVVQAF
CCCEEEECC
>Mature Secondary Structure 
AGRGWALHSNPPLTVPQAFGGKLPASRSEGGDMPATRAFHLAAVLLAGVSLAACATPRY
CCCCCEECCCCCEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
AAGPGGKAPGGKGSAAKAPSGAGGTYKVGKPYQVGGIWYVPREQPDYDKTGIASWYGEAF
CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECCEEEECCCCCCCCCCCHHHHCCCEE
HLKSTANGERFDMNLLSAAHTTLPLPSIVEVTNLENGRRLQVRVNDRGPFVGNRIIDLSR
EEECCCCCCEEEHHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCCCCCHHHHHHH
EAARELGFERQGIARVRVRYVGPAPLLGREAGVRYASARPADPPPRVVETRWDELMEISA
HHHHHCCCCCCCCEEEEEEEECCCCCCCHHHCCEECCCCCCCCCCHHHHHHHHHHHEECC
GGPAAAAQTPTPPPTEVESQPLPAAAPPPVQASPIAAAPAPPLASAPPPAVLPAGLHVQI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEE
GAFSSEANAQRAAAQVAAAGTARVQPIERGGTTLYRVTLPAPADEAGAYALRDQVAAFGF
ECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCCCCHHCHHHHHHHHHHHCC
ADARVVQAF
CCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]