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The map label for this gene is oprF [H]

Identifier: 197105040

GI number: 197105040

Start: 1779790

End: 1780362

Strand: Reverse

Name: oprF [H]

Synonym: PHZ_c1577

Alternate gene names: 197105040

Gene position: 1780362-1779790 (Counterclockwise)

Preceding gene: 197105042

Following gene: 197105036

Centisome position: 44.55

GC content: 69.11

Gene sequence:

>573_bases
ATGGCTAGAAGGAACCTCGAATTGAACAATGGGAAGTTTAGGGCGGCCACGGTGACCGGCGTCCTGCTGCTGGCCGGCGT
CGCCGTCAGCGGCTGCGCCAGCCACCGCTTCGTCCGCGATCAGGTCGCCGTGGTGGACACCCGGGTGACCGGAGTGGAGG
GCACCGCCGGGGAAGCGCTCGCGCGCGCCAACGCGGCCCACAAGCTGGCGGAGGGCAAGTTCCTCTACCAGGTCGTGCTG
TCGGACGATTCGGTGAAGTTCCCGGTCGACCGCCACGCCCTCTCGCCCGAGGCCGAGGCCCGCCTCAACGAGCTGGCCGA
GCGGCTGAAGAGCGAGAACCGCAACGTCTACCTCGAGATCCAGGGTCACACCGACTCCACCGGCCCCGAGGCCTACAACG
ACCAGCTCGGCGAAGCCCGGGCCGAGGCCGTGCGCAAGCATCTGGCCAAGGCGGGCGTCGCCCTCAACCGGATGGGCACG
ATCTCGTACGGCGAGGAGGCTCCCGTGGCCTCAAACGACACCGCCGAGGGCCGGGCCCAGAACCGGCGCGTGGAGATCAT
CGTCCTCAGCTGA

Upstream 100 bases:

>100_bases
TTTAAGGCCAAGCTGCCCTGTTCCGGCCACGGTCGCGTCATGCCGAAGCCACCAGGGCCGGGAACCTAAGCATTGGCTCA
CGCCTTGGGGGTGGGGTTCT

Downstream 100 bases:

>100_bases
CGGGCCGCGGAGGAGGCTCCGGCCTCCTCCGCCTCACCGGGCGTTCAGCGGTCCTCGTAGAGGCGCCGCAGGACGGCCGG
CGCGAGGCCGGGCAGGTCCT

Product: outer membrane protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MARRNLELNNGKFRAATVTGVLLLAGVAVSGCASHRFVRDQVAVVDTRVTGVEGTAGEALARANAAHKLAEGKFLYQVVL
SDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEIQGHTDSTGPEAYNDQLGEARAEAVRKHLAKAGVALNRMGT
ISYGEEAPVASNDTAEGRAQNRRVEIIVLS

Sequences:

>Translated_190_residues
MARRNLELNNGKFRAATVTGVLLLAGVAVSGCASHRFVRDQVAVVDTRVTGVEGTAGEALARANAAHKLAEGKFLYQVVL
SDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEIQGHTDSTGPEAYNDQLGEARAEAVRKHLAKAGVALNRMGT
ISYGEEAPVASNDTAEGRAQNRRVEIIVLS
>Mature_189_residues
ARRNLELNNGKFRAATVTGVLLLAGVAVSGCASHRFVRDQVAVVDTRVTGVEGTAGEALARANAAHKLAEGKFLYQVVLS
DDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEIQGHTDSTGPEAYNDQLGEARAEAVRKHLAKAGVALNRMGTI
SYGEEAPVASNDTAEGRAQNRRVEIIVLS

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788957, Length=170, Percent_Identity=28.8235294117647, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994946, Length=106, Percent_Identity=39.622641509434, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 20433; Mature: 20302

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRNLELNNGKFRAATVTGVLLLAGVAVSGCASHRFVRDQVAVVDTRVTGVEGTAGEAL
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHH
ARANAAHKLAEGKFLYQVVLSDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEI
HHHHHHHHHHCCCEEEEEEECCCCEECCHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
QGHTDSTGPEAYNDQLGEARAEAVRKHLAKAGVALNRMGTISYGEEAPVASNDTAEGRAQ
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
NRRVEIIVLS
CCEEEEEEEC
>Mature Secondary Structure 
ARRNLELNNGKFRAATVTGVLLLAGVAVSGCASHRFVRDQVAVVDTRVTGVEGTAGEAL
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHH
ARANAAHKLAEGKFLYQVVLSDDSVKFPVDRHALSPEAEARLNELAERLKSENRNVYLEI
HHHHHHHHHHCCCEEEEEEECCCCEECCHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
QGHTDSTGPEAYNDQLGEARAEAVRKHLAKAGVALNRMGTISYGEEAPVASNDTAEGRAQ
ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
NRRVEIIVLS
CCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]