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The map label for this gene is algU [H]

Identifier: 197104992

GI number: 197104992

Start: 1730783

End: 1731406

Strand: Direct

Name: algU [H]

Synonym: PHZ_c1529

Alternate gene names: 197104992

Gene position: 1730783-1731406 (Clockwise)

Preceding gene: 197104991

Following gene: 197104993

Centisome position: 43.31

GC content: 74.68

Gene sequence:

>624_bases
CTGGCCCTTCCGGCTGGTCGCGATCATCCTGACCTGCGTGGCTGCGGGCTATGCGGTCGTGGGGCTGATCTTCATGACGA
AGCACCGTCGATGACGCCGGAGGGGGCGGACGCGATGCTGGTCGCGGCCGTCCAGCGCGGCTCGACCGAGGCGTTCGCAC
GCCTGGTGCAGCGCCACCAGCAGGCCGTGCGGGCCTTCCTGCGCCGGGCCTGCGGCGACTGGGCCCTGGCGGACGACCTG
GCGCAGGAGACCTTCCTGGCCGCCTGGGGGCGGATCGGCCAGCTGCGGGCCGGGGCCAGCGTGCGGGCATGGCTGTGCGG
CATCGGCTATCGCAAGCATCTGTCGGTGCTGCGCTCCGGCTCGCGGCGCAGGGCCCGGGACGCGCGTTACGAGCGGGAAC
GGCCGCCCGCGGCGGCGGCGATGACCGACGAGCGGCTGGCCCTGGAGGCCGCGATGGCGGAGCTGCCGGCCGACCAGCGG
GCGTGCGTCGCCCTCTGCCTGGCGGCCGATTTCAGCCACGCGGAGGCTGCCGCGGCGCTGGCGCTGCCGCTGGGCACGGT
GAAGAGTCATGTGGCGCGGGGCCGTGCGCGGCTCCTGCAGGTGCTTGGAGATGGCGATGCGTGA

Upstream 100 bases:

>100_bases
GGCGGGGGGCCTACTGGGCCCTGCGGACCGCCTTGATCACCGGCGCGGTGGCCGCGGGCTTCTGGCTGGCCTCGGAGTTC
GCCGCGCCGGTCACCGACTA

Downstream 100 bases:

>100_bases
AGCTGACGAGCGGCTGAAGGCCCTGTTCGCGGCGGATGAGCCGCCGGCCACCGATCCCGCGTTTTCGGCCGCGGTCATGG
AGGCGGTCCTGCGCCGGGAG

Product: RNA polymerase sigma-70 factor,ECF subfamily

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MALPAGRDHPDLRGCGLCGRGADLHDEAPSMTPEGADAMLVAAVQRGSTEAFARLVQRHQQAVRAFLRRACGDWALADDL
AQETFLAAWGRIGQLRAGASVRAWLCGIGYRKHLSVLRSGSRRRARDARYERERPPAAAAMTDERLALEAAMAELPADQR
ACVALCLAADFSHAEAAAALALPLGTVKSHVARGRARLLQVLGDGDA

Sequences:

>Translated_207_residues
MALPAGRDHPDLRGCGLCGRGADLHDEAPSMTPEGADAMLVAAVQRGSTEAFARLVQRHQQAVRAFLRRACGDWALADDL
AQETFLAAWGRIGQLRAGASVRAWLCGIGYRKHLSVLRSGSRRRARDARYERERPPAAAAMTDERLALEAAMAELPADQR
ACVALCLAADFSHAEAAAALALPLGTVKSHVARGRARLLQVLGDGDA
>Mature_206_residues
ALPAGRDHPDLRGCGLCGRGADLHDEAPSMTPEGADAMLVAAVQRGSTEAFARLVQRHQQAVRAFLRRACGDWALADDLA
QETFLAAWGRIGQLRAGASVRAWLCGIGYRKHLSVLRSGSRRRARDARYERERPPAAAAMTDERLALEAAMAELPADQRA
CVALCLAADFSHAEAAAALALPLGTVKSHVARGRARLLQVLGDGDA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22085; Mature: 21954

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPAGRDHPDLRGCGLCGRGADLHDEAPSMTPEGADAMLVAAVQRGSTEAFARLVQRHQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
QAVRAFLRRACGDWALADDLAQETFLAAWGRIGQLRAGASVRAWLCGIGYRKHLSVLRSG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCC
SRRRARDARYERERPPAAAAMTDERLALEAAMAELPADQRACVALCLAADFSHAEAAAAL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
ALPLGTVKSHVARGRARLLQVLGDGDA
HHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALPAGRDHPDLRGCGLCGRGADLHDEAPSMTPEGADAMLVAAVQRGSTEAFARLVQRHQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
QAVRAFLRRACGDWALADDLAQETFLAAWGRIGQLRAGASVRAWLCGIGYRKHLSVLRSG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCC
SRRRARDARYERERPPAAAAMTDERLALEAAMAELPADQRACVALCLAADFSHAEAAAAL
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHH
ALPLGTVKSHVARGRARLLQVLGDGDA
HHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]