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The map label for this gene is trbF [H]

Identifier: 197104981

GI number: 197104981

Start: 1722401

End: 1723087

Strand: Direct

Name: trbF [H]

Synonym: PHZ_c1518

Alternate gene names: 197104981

Gene position: 1722401-1723087 (Clockwise)

Preceding gene: 197104980

Following gene: 197104982

Centisome position: 43.1

GC content: 69.43

Gene sequence:

>687_bases
ATGAACGTCTTCACTCGACCCGGGGTGCGCTATGGCGCGACCCCCGCCCTCGACACACCTTACCAGCGCGCGGCGCAGGC
CTGGGACGACCGGATCGGCTCTGCCCGGGTGCAGGCCCGGAACTGGCGGCTGATGGCCTTTGGCAGCCTGCTGCTGTCCG
CGGGACTTTCAGGCGCCCTCGTCTGGCAGGGCGCCCGGGGCTCGGTGACCCCCTGGGTGGTGGAGGTCGATCGGCTCGGG
CAGACCCAAGCGGTCGCGCCCGCGGTGGCTGGGTACAAGCCCACCGACCCGCAGATCGCCTGGCACTTGGCGCGCTTTAT
CGAGGAGGTTCGTTCGATCCCGTCGGATCCCGTCGTCGTCCGGCAGAACTGGCTTCGGGCGTATGACTACGCCACCGACC
GTGGGGCCCTAGCCCTGAACGAATACGCCCGCGCCAACGACCCCTTCAGCAAGGTGGGCCACACCCAGGTCGCCGTCGAC
GTCTCCAGCGTGATCCGCGCCTCGCCCGACAGTTTCCGCGTGGCCTGGGTCGAGCGCCGCTACGTGGACGGCGCGCTGGC
CTCCACGGAGCGCTGGACCGCCATCCTCACCGTGGTCCTGCAACCGCCCCGCACGACCGAGCAGCTTCGCAAGAACCCCT
TGGGGGTCTTCGTCCATGCTCTGAATTGGTCTCGGGAGCTCGGCTGA

Upstream 100 bases:

>100_bases
GTCAGGAAGCGGCCCACGGCGCCGCGACCGCCGCCCACGCCCTTCGTTCCGGCGACCATCCCGGCGGCGGAACCTCCGTC
TCGCTCGCAGAGGATCGGTC

Downstream 100 bases:

>100_bases
TGCGAGCCCCGACGCTAATCCTGATGTTGGCCGGGACGACCCTCAGCGGCTGCGCGGCGATGCAGGCCGAGCAATCCAAG
CCCGCTTCTACGGTCCCCGC

Product: conjugal transfer protein TrbF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNVFTRPGVRYGATPALDTPYQRAAQAWDDRIGSARVQARNWRLMAFGSLLLSAGLSGALVWQGARGSVTPWVVEVDRLG
QTQAVAPAVAGYKPTDPQIAWHLARFIEEVRSIPSDPVVVRQNWLRAYDYATDRGALALNEYARANDPFSKVGHTQVAVD
VSSVIRASPDSFRVAWVERRYVDGALASTERWTAILTVVLQPPRTTEQLRKNPLGVFVHALNWSRELG

Sequences:

>Translated_228_residues
MNVFTRPGVRYGATPALDTPYQRAAQAWDDRIGSARVQARNWRLMAFGSLLLSAGLSGALVWQGARGSVTPWVVEVDRLG
QTQAVAPAVAGYKPTDPQIAWHLARFIEEVRSIPSDPVVVRQNWLRAYDYATDRGALALNEYARANDPFSKVGHTQVAVD
VSSVIRASPDSFRVAWVERRYVDGALASTERWTAILTVVLQPPRTTEQLRKNPLGVFVHALNWSRELG
>Mature_228_residues
MNVFTRPGVRYGATPALDTPYQRAAQAWDDRIGSARVQARNWRLMAFGSLLLSAGLSGALVWQGARGSVTPWVVEVDRLG
QTQAVAPAVAGYKPTDPQIAWHLARFIEEVRSIPSDPVVVRQNWLRAYDYATDRGALALNEYARANDPFSKVGHTQVAVD
VSSVIRASPDSFRVAWVERRYVDGALASTERWTAILTVVLQPPRTTEQLRKNPLGVFVHALNWSRELG

Specific function: Unknown

COG id: COG3701

COG function: function code U; Type IV secretory pathway, TrbF components

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 25280; Mature: 25280

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVFTRPGVRYGATPALDTPYQRAAQAWDDRIGSARVQARNWRLMAFGSLLLSAGLSGAL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCEEHHHHHHHHHHCCCCCEE
VWQGARGSVTPWVVEVDRLGQTQAVAPAVAGYKPTDPQIAWHLARFIEEVRSIPSDPVVV
EEECCCCCCCCEEEEHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEH
RQNWLRAYDYATDRGALALNEYARANDPFSKVGHTQVAVDVSSVIRASPDSFRVAWVERR
HHHHHHHHHCCCCCCCEEHHHHHHCCCCHHHHCCEEEEEEHHHHHHCCCCCEEEEEHHHH
YVDGALASTERWTAILTVVLQPPRTTEQLRKNPLGVFVHALNWSRELG
HHCCHHHCCHHHEEEEEEEECCCCCHHHHHCCCCEEEEEEECCHHCCC
>Mature Secondary Structure
MNVFTRPGVRYGATPALDTPYQRAAQAWDDRIGSARVQARNWRLMAFGSLLLSAGLSGAL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCEEHHHHHHHHHHCCCCCEE
VWQGARGSVTPWVVEVDRLGQTQAVAPAVAGYKPTDPQIAWHLARFIEEVRSIPSDPVVV
EEECCCCCCCCEEEEHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEH
RQNWLRAYDYATDRGALALNEYARANDPFSKVGHTQVAVDVSSVIRASPDSFRVAWVERR
HHHHHHHHHCCCCCCCEEHHHHHHCCCCHHHHCCEEEEEEHHHHHHCCCCCEEEEEHHHH
YVDGALASTERWTAILTVVLQPPRTTEQLRKNPLGVFVHALNWSRELG
HHCCHHHCCHHHEEEEEEEECCCCCHHHHHCCCCEEEEEEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]