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The map label for this gene is xerD [C]

Identifier: 197104955

GI number: 197104955

Start: 1697402

End: 1698724

Strand: Direct

Name: xerD [C]

Synonym: PHZ_c1492

Alternate gene names: 197104955

Gene position: 1697402-1698724 (Clockwise)

Preceding gene: 197104953

Following gene: 197104956

Centisome position: 42.47

GC content: 73.47

Gene sequence:

>1323_bases
ATGATCCTGCGTGACGGCGCGCTCTACGATCCCGATCTCGACCGCTTCTTCCTCGATCTGCCGCTGAGCGGGGTGCCCTC
GCGCCATTCGCTGCGCGCCTATGCCTACGACGTGGCGGTATGGGTCCGCTTCCTCGCCGCTGCCTGCGGCAAGCACGTCT
GGGCGGCCGGCCGCGAGGACGTCGCCGGGTTCCACCGCGCGCGACGGCGCGAGGACGCCGGCACCCGGATCTCAGCGGCC
TCCTGGAACCGCGCCGTGGCCGCCCTGGAGAAGCTCTACCGCTGGGGCGAGGCCGAGGGCCTTGTCGCCCAGACGCCGTT
CACCCATCGCGCCATCTGGCGTCGCGGACACGCCGGCGGCCGCGGCCGGATGACCGGCCGCAACGACGCCTATGAGCGGG
CGGCGAAGCGCGCCGACGTCCGCTTCGCCACGCTCGAGGACTATCGCCTGTTCCGCGACGTGGGTCTGCGCGGCCTTACG
CTGGACGGGGGTGAGCGGCCGGGCGCGCGCGACCGCAACGGCGCGCGCAACGCGCTCTTCGCCGAGCTGCTGGTCACGAC
CGGGCTGCGGCTCGAGGAGGCGTCCTCGCTGTTCGCTGCCGAGCTTGCCGGCCTGGCTCCCGCTGCGGCGGCCGATCGGC
AGGTCTGGCTGGAGCTGCCGCAGGGCCTCACCAAGGGCGAGCGCGGCCGGCGCGTTCTCATACCCCGCCGGTTTGTGCAG
CAGCTGCTGCCCTATTTGGCGGTCGAGCGCGCCAGCGCCGTCACTAAGTTCCAGGCGCGATCCGGCTGGCGCGCCATCGA
GCGGCCGATCTTCGCCCGCGCGATCGATCCGGGATCCCGCGTGCGGCTGCGCGACGGCGGATCGGTCTCGATGGACGCGC
TGACGCCGGATGAGCGAGGTCGCCTCGTGCTCTGCGCCGAGGACGGCGCGCCGGCCGAGCCGGCGGCGCTGTGGCTGACC
GAGGTCGGCCAGCCGGTGCGGCCTAACTCCTGGGAGGCCGTCTTCGCCCGCGCCTCGCGGCGCTGCGCCGAGGCCGGCAG
GCCCATCCGGATCAGCCCACACCAGCTGCGCCACACCTTCGCGGTCCACATGCTCGCCATGCTGATCCAGCACCGGCTCG
CCGAGGCTTCGCCTTCGGCCGGCCCGATGGCCGGCTACCGCGAGCTGCTCGGCGATCCGCTGCAGCAGGTTCAGCGCCTG
CTCGGCCACGCCAGCCTCGCCACCACCTACATCTATCTCGACCACATCGCCTCGCGCGCCGACACGGTCGACGCCGCCGT
CGAGGAGCTGCTGGCGCTCCTGCCCGCACGGCCGAGGGCGTGA

Upstream 100 bases:

>100_bases
GGGGTCCGGGGGAGTTTCGCCTGTGGACGAGCTTGCCGCGTCTTCGACGATCACGGTGCAGGAGCGGCGACCGGTGGAAG
GTCTCGACACGCACGTGCCG

Downstream 100 bases:

>100_bases
GCGGCAGACCACGCAGGGGGCGCCGCGTCGGCTTCACCGCGGCCGACGGCGCCCGATCCGACGAGCCTGGCGATCAGGTC
GCCGGCCTGCGGTTCACCAT

Product: Site-specific recombinase XerD

Products: NA

Alternate protein names: Integrase Domain Protein SAM Domain Protein; Phage Integrase-Like SAM-Like; Phage Integrase Domain/SAM Domain-Containing Protein; Site-Specific Recombinase XerD; Phage Integrase Family Domain-Containing Protein; Phage Integrase Family Protein; Phage Integrase Family Domain Protein; Phage Integrase-Like SAM-Like Protein; Phage Type Integrase/Recombinase; Orf_Bo

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MILRDGALYDPDLDRFFLDLPLSGVPSRHSLRAYAYDVAVWVRFLAAACGKHVWAAGREDVAGFHRARRREDAGTRISAA
SWNRAVAALEKLYRWGEAEGLVAQTPFTHRAIWRRGHAGGRGRMTGRNDAYERAAKRADVRFATLEDYRLFRDVGLRGLT
LDGGERPGARDRNGARNALFAELLVTTGLRLEEASSLFAAELAGLAPAAAADRQVWLELPQGLTKGERGRRVLIPRRFVQ
QLLPYLAVERASAVTKFQARSGWRAIERPIFARAIDPGSRVRLRDGGSVSMDALTPDERGRLVLCAEDGAPAEPAALWLT
EVGQPVRPNSWEAVFARASRRCAEAGRPIRISPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRL
LGHASLATTYIYLDHIASRADTVDAAVEELLALLPARPRA

Sequences:

>Translated_440_residues
MILRDGALYDPDLDRFFLDLPLSGVPSRHSLRAYAYDVAVWVRFLAAACGKHVWAAGREDVAGFHRARRREDAGTRISAA
SWNRAVAALEKLYRWGEAEGLVAQTPFTHRAIWRRGHAGGRGRMTGRNDAYERAAKRADVRFATLEDYRLFRDVGLRGLT
LDGGERPGARDRNGARNALFAELLVTTGLRLEEASSLFAAELAGLAPAAAADRQVWLELPQGLTKGERGRRVLIPRRFVQ
QLLPYLAVERASAVTKFQARSGWRAIERPIFARAIDPGSRVRLRDGGSVSMDALTPDERGRLVLCAEDGAPAEPAALWLT
EVGQPVRPNSWEAVFARASRRCAEAGRPIRISPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRL
LGHASLATTYIYLDHIASRADTVDAAVEELLALLPARPRA
>Mature_440_residues
MILRDGALYDPDLDRFFLDLPLSGVPSRHSLRAYAYDVAVWVRFLAAACGKHVWAAGREDVAGFHRARRREDAGTRISAA
SWNRAVAALEKLYRWGEAEGLVAQTPFTHRAIWRRGHAGGRGRMTGRNDAYERAAKRADVRFATLEDYRLFRDVGLRGLT
LDGGERPGARDRNGARNALFAELLVTTGLRLEEASSLFAAELAGLAPAAAADRQVWLELPQGLTKGERGRRVLIPRRFVQ
QLLPYLAVERASAVTKFQARSGWRAIERPIFARAIDPGSRVRLRDGGSVSMDALTPDERGRLVLCAEDGAPAEPAALWLT
EVGQPVRPNSWEAVFARASRRCAEAGRPIRISPHQLRHTFAVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRL
LGHASLATTYIYLDHIASRADTVDAAVEELLALLPARPRA

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48572; Mature: 48572

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILRDGALYDPDLDRFFLDLPLSGVPSRHSLRAYAYDVAVWVRFLAAACGKHVWAAGRED
CEECCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VAGFHRARRREDAGTRISAASWNRAVAALEKLYRWGEAEGLVAQTPFTHRAIWRRGHAGG
HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHCCCCCC
RGRMTGRNDAYERAAKRADVRFATLEDYRLFRDVGLRGLTLDGGERPGARDRNGARNALF
CCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHH
AELLVTTGLRLEEASSLFAAELAGLAPAAAADRQVWLELPQGLTKGERGRRVLIPRRFVQ
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCCCCCCEEECCHHHHH
QLLPYLAVERASAVTKFQARSGWRAIERPIFARAIDPGSRVRLRDGGSVSMDALTPDERG
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCEEEEECCCCEEECCCCCCCCC
RLVLCAEDGAPAEPAALWLTEVGQPVRPNSWEAVFARASRRCAEAGRPIRISPHQLRHTF
CEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHH
AVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRLLGHASLATTYIYLDHIASRA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVDAAVEELLALLPARPRA
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MILRDGALYDPDLDRFFLDLPLSGVPSRHSLRAYAYDVAVWVRFLAAACGKHVWAAGRED
CEECCCCCCCCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VAGFHRARRREDAGTRISAASWNRAVAALEKLYRWGEAEGLVAQTPFTHRAIWRRGHAGG
HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHCCCCCC
RGRMTGRNDAYERAAKRADVRFATLEDYRLFRDVGLRGLTLDGGERPGARDRNGARNALF
CCCCCCCCHHHHHHHHHHCCEEEEHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHH
AELLVTTGLRLEEASSLFAAELAGLAPAAAADRQVWLELPQGLTKGERGRRVLIPRRFVQ
HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHCCCCCCCCCCEEECCHHHHH
QLLPYLAVERASAVTKFQARSGWRAIERPIFARAIDPGSRVRLRDGGSVSMDALTPDERG
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHCCCCCCEEEEECCCCEEECCCCCCCCC
RLVLCAEDGAPAEPAALWLTEVGQPVRPNSWEAVFARASRRCAEAGRPIRISPHQLRHTF
CEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHH
AVHMLAMLIQHRLAEASPSAGPMAGYRELLGDPLQQVQRLLGHASLATTYIYLDHIASRA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DTVDAAVEELLALLPARPRA
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA