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The map label for this gene is copD [H]

Identifier: 197104945

GI number: 197104945

Start: 1681610

End: 1682539

Strand: Reverse

Name: copD [H]

Synonym: PHZ_c1480

Alternate gene names: 197104945

Gene position: 1682539-1681610 (Counterclockwise)

Preceding gene: 197104946

Following gene: 197104938

Centisome position: 42.1

GC content: 73.12

Gene sequence:

>930_bases
GTGCTGGACTCTGCGGTCGTCGCCCTAAGGCTGCTGCAGTATGGCGGAGCGATGATCCTCCTGGGATCATCGCTCTTCTT
CATCCACGCCCTCCCCCGACGCGGCGCGGGCTCCGCAGGCGAGGCGCCTTGGGCCCGCGGCCTCATCGCTGCCGCCGCCG
CGCTGCTGGCCGCGGCCGCCCTGCTGTCGCTGCCAGTCCACGCGAGCCTGTTGGCGGGCTCGGCGTCGGAGGCCTTCAAC
CCGGAAACCCTCGCCGCCCTGGTCACCGCCATGGGGCTCGGCAAGGCGGCCGTCGTGCGCGCCTGCGCCGCGGTCGCGGC
GTGCGTCCTGGTGCTGGCCCTCAGGCCGTCACGCGGCAGTTGGAGCGCCGTCGCGGCGTTGGGCGCCGTCGCCGTGGCGA
GCCTCGCCTGGATGGGTCACGGGGCCGCCACCGAAGGCGCGATGGGGCGCATCCACCTGATCTCGGACGTGTTGCACAGC
TGGGCGGCCGCCGTCTGGATCGGCGCACTGGCCGCGTTCCTGTTCCTGCTGCTTGCGCGCCGGCGAAGCTCTGAAGAAGC
GACCGCCCTCCACCGCGCGCTCCATGGGTTCTCCGGCGTCGGCTCGCTGGTGGTGGCCGTCCTGGTGATGACCGGCGCGG
TGAACGGAGCCATCCTTGTGGGCCTCGACCGCATCGAAGGCCTATGGACCACCCCCTACGGCCGGCTTCTCAGCCTCAAG
ATCCTGCTGTTCCTCGGCATGCTCGGCTTGGCGGCCGCCAACCGCTATCGGCTCACGCCAGCCCTGAGGGCGGCGCTCGG
CGCGCCGGAGGGGCTCGACGTCGCCGTGGCCGCCCTGCGCCGGAGCCTGGTGGTCGAAACGGCCTTCGGGCTAGCGGTCC
TCGCCCTGGTGGCCTGGTTCGGCACGCTGCCGCCGCCGGCGGCGCTCTGA

Upstream 100 bases:

>100_bases
CAAGCCGCGCTGACCAAGGGCGCTTACAAGATCATCTGGTCCGCCGCGACGGGCGACGGGCACAAGATGAGCGGCGAAGT
CGCCTTCAAGGTCGGCTGAC

Downstream 100 bases:

>100_bases
GCCGGAGCCGAGCCGGGACGGACGGTCGTCCGTCCCGGCGCGCGCCGTTAGCAGCTGCCGCAGCAACCCGCCTTCGCGGG
ACCAGCCCCGGCGCCGGCGG

Product: putative copper export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLDSAVVALRLLQYGGAMILLGSSLFFIHALPRRGAGSAGEAPWARGLIAAAAALLAAAALLSLPVHASLLAGSASEAFN
PETLAALVTAMGLGKAAVVRACAAVAACVLVLALRPSRGSWSAVAALGAVAVASLAWMGHGAATEGAMGRIHLISDVLHS
WAAAVWIGALAAFLFLLLARRRSSEEATALHRALHGFSGVGSLVVAVLVMTGAVNGAILVGLDRIEGLWTTPYGRLLSLK
ILLFLGMLGLAAANRYRLTPALRAALGAPEGLDVAVAALRRSLVVETAFGLAVLALVAWFGTLPPPAAL

Sequences:

>Translated_309_residues
MLDSAVVALRLLQYGGAMILLGSSLFFIHALPRRGAGSAGEAPWARGLIAAAAALLAAAALLSLPVHASLLAGSASEAFN
PETLAALVTAMGLGKAAVVRACAAVAACVLVLALRPSRGSWSAVAALGAVAVASLAWMGHGAATEGAMGRIHLISDVLHS
WAAAVWIGALAAFLFLLLARRRSSEEATALHRALHGFSGVGSLVVAVLVMTGAVNGAILVGLDRIEGLWTTPYGRLLSLK
ILLFLGMLGLAAANRYRLTPALRAALGAPEGLDVAVAALRRSLVVETAFGLAVLALVAWFGTLPPPAAL
>Mature_309_residues
MLDSAVVALRLLQYGGAMILLGSSLFFIHALPRRGAGSAGEAPWARGLIAAAAALLAAAALLSLPVHASLLAGSASEAFN
PETLAALVTAMGLGKAAVVRACAAVAACVLVLALRPSRGSWSAVAALGAVAVASLAWMGHGAATEGAMGRIHLISDVLHS
WAAAVWIGALAAFLFLLLARRRSSEEATALHRALHGFSGVGSLVVAVLVMTGAVNGAILVGLDRIEGLWTTPYGRLLSLK
ILLFLGMLGLAAANRYRLTPALRAALGAPEGLDVAVAALRRSLVVETAFGLAVLALVAWFGTLPPPAAL

Specific function: Exact function not known. Involved in copper resistance. Appears to be involved in copper uptake in conjunction with CopC [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CopD family [H]

Homologues:

Organism=Escherichia coli, GI1788145, Length=259, Percent_Identity=28.1853281853282, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008457 [H]

Pfam domain/function: PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 31319; Mature: 31319

Theoretical pI: Translated: 11.17; Mature: 11.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSAVVALRLLQYGGAMILLGSSLFFIHALPRRGAGSAGEAPWARGLIAAAAALLAAAA
CCCHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LLSLPVHASLLAGSASEAFNPETLAALVTAMGLGKAAVVRACAAVAACVLVLALRPSRGS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
WSAVAALGAVAVASLAWMGHGAATEGAMGRIHLISDVLHSWAAAVWIGALAAFLFLLLAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSSEEATALHRALHGFSGVGSLVVAVLVMTGAVNGAILVGLDRIEGLWTTPYGRLLSLK
HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCHHHHHHHH
ILLFLGMLGLAAANRYRLTPALRAALGAPEGLDVAVAALRRSLVVETAFGLAVLALVAWF
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLPPPAAL
CCCCCCCCC
>Mature Secondary Structure
MLDSAVVALRLLQYGGAMILLGSSLFFIHALPRRGAGSAGEAPWARGLIAAAAALLAAAA
CCCHHHHHHHHHHHCCEEEECCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LLSLPVHASLLAGSASEAFNPETLAALVTAMGLGKAAVVRACAAVAACVLVLALRPSRGS
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
WSAVAALGAVAVASLAWMGHGAATEGAMGRIHLISDVLHSWAAAVWIGALAAFLFLLLAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSSEEATALHRALHGFSGVGSLVVAVLVMTGAVNGAILVGLDRIEGLWTTPYGRLLSLK
HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCHHHHHHHH
ILLFLGMLGLAAANRYRLTPALRAALGAPEGLDVAVAALRRSLVVETAFGLAVLALVAWF
HHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLPPPAAL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA