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The map label for this gene is pecT [H]

Identifier: 197104858

GI number: 197104858

Start: 1574405

End: 1575307

Strand: Reverse

Name: pecT [H]

Synonym: PHZ_c1392

Alternate gene names: 197104858

Gene position: 1575307-1574405 (Counterclockwise)

Preceding gene: 197104861

Following gene: 197104847

Centisome position: 39.42

GC content: 73.64

Gene sequence:

>903_bases
ATGTTCGATCAGGATCTGTTGCGCACCTTCGTGACCATCGTCGATGCGGGGAGCTTCGCGGCCGCCGCGGACGCCGTCGG
TCGCACGCCCTCGGCCGTGAGCATGCAGATCAAGCGGCTGGAGGAGCAGGCGGGCCGCCGCCTGCTGGTGCGCGGCGCCC
AGGGCGTCCGGCTGACGGGCGACGGAGAGATGCTGCTCGTCCACGCGCGCGAGATCCTGCGGGCGCACGAGATCGCCTTC
GACGCCATGATGAACGAGCGGTCCGCCCGCTCCCTGACCCTGGGCCTGCCCGACACCTACGTGGCGACCCTGCTCACGGA
AGTGCTGGACGAGCTGGTCGCCGGCTTTCCCGACACCAATCTGCGGGTGGTGGTCGACGGCTCCGGCGCGCTGATGCGCC
GGCTCGAGGAGGCCGCCCTCGATCTGGCGCTGGTGACCGAATACCAGCTGGGCGGCGACGAGCGGGGCGAGCTCGTGCAC
CTCGAGCGGGGCCTGTGGGCCTGCGCCGAGGATTGCCCGGCCCTGGCCCTCACGCCTCTCCCGGTCGCGCTCATGTTCGA
AGGCAGCGTCTTCCGGCGCCTCGCGCAGGAGATGCTGCGGGCGGTCGCCCGCCCCTACCGCATCGCCGTGACCTCCAACG
CCGAGACCGTGATCCGGGCCGCGGTGGCGTCGGGCGCCGTGGTCGCGCCCCTGCCGGAGTCGCGGATGGCGGGCCTGCGC
GAACTCACGCCCGAGGAGGGCTTTCCCCGGTTCCCGCCCCTCAAGGTGCGCCTCCGCACAGGCCGCCGTCGGCTGCCGCC
CGCCGGGGAATGGCTCGCCCAGCGCCTGATCGCCCGGGCCGCGGCCGTGGACGCCGCCACGAAGGCGCCCGCCGCCCCCG
CGCCATCCGAATTCTCGCCCTAG

Upstream 100 bases:

>100_bases
GAAGCGGTTCGCGCCCTCTGGCGCGGGCCGCCTCATTGCCTCCGAGACCGGCGTTTTTCGAACGAATAGACTTGAAATCG
CAGTTCAATAGAATTGAACC

Downstream 100 bases:

>100_bases
AACGGGATCTCGTCGTCGAGGTCGGCCGAGAAGTCCTCGCGCGGGCCTGAGCTCTGGGCGCGGGGGCCCGAGGAGAAGCC
GCCGCCATAGCCGCCTTCGT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MFDQDLLRTFVTIVDAGSFAAAADAVGRTPSAVSMQIKRLEEQAGRRLLVRGAQGVRLTGDGEMLLVHAREILRAHEIAF
DAMMNERSARSLTLGLPDTYVATLLTEVLDELVAGFPDTNLRVVVDGSGALMRRLEEAALDLALVTEYQLGGDERGELVH
LERGLWACAEDCPALALTPLPVALMFEGSVFRRLAQEMLRAVARPYRIAVTSNAETVIRAAVASGAVVAPLPESRMAGLR
ELTPEEGFPRFPPLKVRLRTGRRRLPPAGEWLAQRLIARAAAVDAATKAPAAPAPSEFSP

Sequences:

>Translated_300_residues
MFDQDLLRTFVTIVDAGSFAAAADAVGRTPSAVSMQIKRLEEQAGRRLLVRGAQGVRLTGDGEMLLVHAREILRAHEIAF
DAMMNERSARSLTLGLPDTYVATLLTEVLDELVAGFPDTNLRVVVDGSGALMRRLEEAALDLALVTEYQLGGDERGELVH
LERGLWACAEDCPALALTPLPVALMFEGSVFRRLAQEMLRAVARPYRIAVTSNAETVIRAAVASGAVVAPLPESRMAGLR
ELTPEEGFPRFPPLKVRLRTGRRRLPPAGEWLAQRLIARAAAVDAATKAPAAPAPSEFSP
>Mature_300_residues
MFDQDLLRTFVTIVDAGSFAAAADAVGRTPSAVSMQIKRLEEQAGRRLLVRGAQGVRLTGDGEMLLVHAREILRAHEIAF
DAMMNERSARSLTLGLPDTYVATLLTEVLDELVAGFPDTNLRVVVDGSGALMRRLEEAALDLALVTEYQLGGDERGELVH
LERGLWACAEDCPALALTPLPVALMFEGSVFRRLAQEMLRAVARPYRIAVTSNAETVIRAAVASGAVVAPLPESRMAGLR
ELTPEEGFPRFPPLKVRLRTGRRRLPPAGEWLAQRLIARAAAVDAATKAPAAPAPSEFSP

Specific function: Regulates pectinase gene expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=33.984375, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788297, Length=236, Percent_Identity=30.0847457627119, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786713, Length=77, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32397; Mature: 32397

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQDLLRTFVTIVDAGSFAAAADAVGRTPSAVSMQIKRLEEQAGRRLLVRGAQGVRLTG
CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEC
DGEMLLVHAREILRAHEIAFDAMMNERSARSLTLGLPDTYVATLLTEVLDELVAGFPDTN
CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
LRVVVDGSGALMRRLEEAALDLALVTEYQLGGDERGELVHLERGLWACAEDCPALALTPL
CEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEECCCHHHHHHCCCCEEECCC
PVALMFEGSVFRRLAQEMLRAVARPYRIAVTSNAETVIRAAVASGAVVAPLPESRMAGLR
CEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEECCCHHHHHHHH
ELTPEEGFPRFPPLKVRLRTGRRRLPPAGEWLAQRLIARAAAVDAATKAPAAPAPSEFSP
HCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFDQDLLRTFVTIVDAGSFAAAADAVGRTPSAVSMQIKRLEEQAGRRLLVRGAQGVRLTG
CCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEC
DGEMLLVHAREILRAHEIAFDAMMNERSARSLTLGLPDTYVATLLTEVLDELVAGFPDTN
CCCEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
LRVVVDGSGALMRRLEEAALDLALVTEYQLGGDERGELVHLERGLWACAEDCPALALTPL
CEEEECCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCEEEECCCHHHHHHCCCCEEECCC
PVALMFEGSVFRRLAQEMLRAVARPYRIAVTSNAETVIRAAVASGAVVAPLPESRMAGLR
CEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEECCCHHHHHHHH
ELTPEEGFPRFPPLKVRLRTGRRRLPPAGEWLAQRLIARAAAVDAATKAPAAPAPSEFSP
HCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]