Click here to switch to the map view.

The map label for this gene is exoD [H]

Identifier: 197104833

GI number: 197104833

Start: 1551400

End: 1551993

Strand: Reverse

Name: exoD [H]

Synonym: PHZ_c1367

Alternate gene names: 197104833

Gene position: 1551993-1551400 (Counterclockwise)

Preceding gene: 197104834

Following gene: 197104827

Centisome position: 38.84

GC content: 69.87

Gene sequence:

>594_bases
ATGGCCGAAGAGACCCCCCAGGACCTCGAAGACCTGCTGGATGAACTGAGCGGCGTCGCGAAGCGCTGTGGCGACAAGGT
CTCGGTGCGCGAGGTCTACTGCGCCGTCGGCGAGCGCTCGTTCGGGCCGCTACTGCTCGTGGCGGGGCTGCTGGGAATGA
CCCCGGTCTCGGCCGTGCCGGGCGCCCCCACGGTGCTGGCGCTGATCACCATCCTGATCGCCGGCCAACTGCTGTTCGGC
CGCTCGACGCTGTGGCTGCCCCGCCGGCTGCTGGATCTGTCGGTCGGCGCGGACAAGCTGGAGAAGACCGTGAAGATCGC
CCGCAAGCCCGCCCGGTTCGTGGACCGTGTCGTCCGGCCCCGCCTGACCTTCCTGACCGGCCGCCTGGCGGACCGCGTCG
TGGCCGGTGTCTGCATTCTGGTGGCGTGCGCCGTCCCGCCCCTGGAATTCCTGCCCTTCATGGCCTTCGTGCCAGCCACC
GCCATCGCCGCCTTCGGCCTGGGGATCGTCGCTCGCGACGGTCTGCTGATCCTGGTCGCCTTCGGGGCGAGCGCGGGCAC
GCTTTCTCTTCTAGGGCGCCAACTGCTGTTCTGA

Upstream 100 bases:

>100_bases
CGGGGCCGCGGCTGGACGGGATGGCCCGACGGCGGCTGCCGCGCCAAGGCGTCGGACTGGACGTGGTGACCGCCAGGGGA
CTTCGCGCGTTGAACCCCCC

Downstream 100 bases:

>100_bases
CACCCGCTCCGCTCAGCCGAGCAGGCGCATGAGTCCGCGCACAATCAGTATCCACAGCGCCGCCGAGAGCAGGACGACGG
ACAGGAGCGAGAGGAGGGCG

Product: probable exopolysaccharide synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MAEETPQDLEDLLDELSGVAKRCGDKVSVREVYCAVGERSFGPLLLVAGLLGMTPVSAVPGAPTVLALITILIAGQLLFG
RSTLWLPRRLLDLSVGADKLEKTVKIARKPARFVDRVVRPRLTFLTGRLADRVVAGVCILVACAVPPLEFLPFMAFVPAT
AIAAFGLGIVARDGLLILVAFGASAGTLSLLGRQLLF

Sequences:

>Translated_197_residues
MAEETPQDLEDLLDELSGVAKRCGDKVSVREVYCAVGERSFGPLLLVAGLLGMTPVSAVPGAPTVLALITILIAGQLLFG
RSTLWLPRRLLDLSVGADKLEKTVKIARKPARFVDRVVRPRLTFLTGRLADRVVAGVCILVACAVPPLEFLPFMAFVPAT
AIAAFGLGIVARDGLLILVAFGASAGTLSLLGRQLLF
>Mature_196_residues
AEETPQDLEDLLDELSGVAKRCGDKVSVREVYCAVGERSFGPLLLVAGLLGMTPVSAVPGAPTVLALITILIAGQLLFGR
STLWLPRRLLDLSVGADKLEKTVKIARKPARFVDRVVRPRLTFLTGRLADRVVAGVCILVACAVPPLEFLPFMAFVPATA
IAAFGLGIVARDGLLILVAFGASAGTLSLLGRQLLF

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 20863; Mature: 20732

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEETPQDLEDLLDELSGVAKRCGDKVSVREVYCAVGERSFGPLLLVAGLLGMTPVSAVP
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
GAPTVLALITILIAGQLLFGRSTLWLPRRLLDLSVGADKLEKTVKIARKPARFVDRVVRP
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLTFLTGRLADRVVAGVCILVACAVPPLEFLPFMAFVPATAIAAFGLGIVARDGLLILVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FGASAGTLSLLGRQLLF
ECCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AEETPQDLEDLLDELSGVAKRCGDKVSVREVYCAVGERSFGPLLLVAGLLGMTPVSAVP
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
GAPTVLALITILIAGQLLFGRSTLWLPRRLLDLSVGADKLEKTVKIARKPARFVDRVVRP
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLTFLTGRLADRVVAGVCILVACAVPPLEFLPFMAFVPATAIAAFGLGIVARDGLLILVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
FGASAGTLSLLGRQLLF
ECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]