| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104722
Identifier: 197104722
GI number: 197104722
Start: 1433679
End: 1434941
Strand: Direct
Name: 197104722
Synonym: PHZ_c1256
Alternate gene names: NA
Gene position: 1433679-1434941 (Clockwise)
Preceding gene: 197104721
Following gene: 197104723
Centisome position: 35.88
GC content: 73.32
Gene sequence:
>1263_bases ATGGCGGGACGCTATGAGGCCGCCATGCGTCTCGTAAGCCTCCTCGCATTCCTGCTGCTCGCCGCCTGCGCCGCCCTGCC TTCGGGGGGATCGCCCGACCGCCTGTCCGCCAGCCCGCCGGAGCGCCCGCCGGTCATCCTGATCTCCATCGACGGTTTCC GGGCCGACTACCTCGACCGCGGCGTGACCCCGACGCTCTCGCTCCTGGCGGCGGATGGGGCGCGGGCGACCATGCGGCCG TCGTTCCCCTCCAAGACCTTCCCCAACCACTACGCCCTCGTCACCGGCCTGCCGCCCGACCGCAACGGCATCGTCGAGAA CAACATGCAGGACCCGGCGATCCCGGGCGTGACCTTCAAGATGTCGAACCGGCCGGCCGTGCTGGACCGCCGCTGGTGGG ACCAGGCCGAGCCGATCTGGGTGACCGCCGAGCGGGCCGGGGTGCGCAGCGCCACCCTGTTCTGGCCGGGTTCGGAGGCC GACGTCCGCGGCGTGCGCCCGAGCCGGTGGCTGCCCTACGACGAGGCGATGCCGAACGCCGCCCGCATCGCCCGGGTGCT GGCCTGGCTGGACCTGCCGCCGGACGAGCGGCCGGGCCTCGTGACGCTCTACTTCCACCAGGTGGACACCGCCGGCCACG ACCACGGGCCGGACTCGCCCGAGGTGAACGCCGCCCTGGGCGATGTGGACGAGGCCCTGGGGGCGCTGGTCGCCGGCCTG GAGGCGAGGGGGCTTGCCGCCAACCTGCTGGTCGTCTCGGACCACGGCATGGCCGCGACCTCGCCCGACCGCCGCATCTT CCTCGAGGACCTGATGCCCCTGGACGCCGGGCGCACGCTGGCCATGGGCGCCCTCATGACCCTCTACCCGCAGCCGGGGC GCGGGGCGGAAGTCGAGCGGGCGCTGCTGAAGCGGCATCCGCACATGGACTGCTGGCGCAAGGGCGAGATCCCGCCCCGG TTCCGGTACGGCGCCAATCCGCGCGTCGCGCCGATCTTCTGCCTGCCGCAGACGGGCTGGAGCATCACCACCCGGGCGTG GGTCGCCAAGGCCAAGCCCGAGCCCGGCGCGCACGGCTACGATCCGGCCCACCCGGACATGGCGGCGATCTTCGTCGCCC ACGGCCCCGCCTTCCGGAAGGGCGTGCGGGCGCCCGATTTCGACAACGTGGACGTCTATCCGCTGCTCGCCCGGCTGCTC GGCCTGCGGCCCGCGGCGAACGACGGCGACCTGGACGAGCTCGGGACGGTCTTGACGAGATAA
Upstream 100 bases:
>100_bases CGGTGGCCGAGGCGGCCTTCGCCGAGGCCTGATCGCCCGGCATACCCCATCGACGAGCCCCGGAAGGCGACTTCCGGGGC TTTTCGTTTGCGCAGACGTC
Downstream 100 bases:
>100_bases TTGCGTTATGCGTGAAATATTGCCGGAAGACGCAAGGAGACGCCCGATGGCCGCCCGCGCAACGCTCACCTCGGCCCTGT GCTACCGCGACCCCAAGGCC
Product: type I phosphodiesterase/nucleotide pyrophosphatase family protein
Products: NA
Alternate protein names: Nucleotide Diphosphatase; Type I Phosphodiesterase/Nucleotide Pyrophosphatase Protein; Type I Phosphodiesterase/Nucleotide Pyrophosphatase; Phosphodiesterase-Nucleotide Pyrophosphatase; RB13-6 Antigen; Phosphodiesterase-Nucleotide Pyrophosphatase-Like Protein; Sulfatase; Nucleotide Pyrophosphatase Family Protein
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MAGRYEAAMRLVSLLAFLLLAACAALPSGGSPDRLSASPPERPPVILISIDGFRADYLDRGVTPTLSLLAADGARATMRP SFPSKTFPNHYALVTGLPPDRNGIVENNMQDPAIPGVTFKMSNRPAVLDRRWWDQAEPIWVTAERAGVRSATLFWPGSEA DVRGVRPSRWLPYDEAMPNAARIARVLAWLDLPPDERPGLVTLYFHQVDTAGHDHGPDSPEVNAALGDVDEALGALVAGL EARGLAANLLVVSDHGMAATSPDRRIFLEDLMPLDAGRTLAMGALMTLYPQPGRGAEVERALLKRHPHMDCWRKGEIPPR FRYGANPRVAPIFCLPQTGWSITTRAWVAKAKPEPGAHGYDPAHPDMAAIFVAHGPAFRKGVRAPDFDNVDVYPLLARLL GLRPAANDGDLDELGTVLTR
Sequences:
>Translated_420_residues MAGRYEAAMRLVSLLAFLLLAACAALPSGGSPDRLSASPPERPPVILISIDGFRADYLDRGVTPTLSLLAADGARATMRP SFPSKTFPNHYALVTGLPPDRNGIVENNMQDPAIPGVTFKMSNRPAVLDRRWWDQAEPIWVTAERAGVRSATLFWPGSEA DVRGVRPSRWLPYDEAMPNAARIARVLAWLDLPPDERPGLVTLYFHQVDTAGHDHGPDSPEVNAALGDVDEALGALVAGL EARGLAANLLVVSDHGMAATSPDRRIFLEDLMPLDAGRTLAMGALMTLYPQPGRGAEVERALLKRHPHMDCWRKGEIPPR FRYGANPRVAPIFCLPQTGWSITTRAWVAKAKPEPGAHGYDPAHPDMAAIFVAHGPAFRKGVRAPDFDNVDVYPLLARLL GLRPAANDGDLDELGTVLTR >Mature_419_residues AGRYEAAMRLVSLLAFLLLAACAALPSGGSPDRLSASPPERPPVILISIDGFRADYLDRGVTPTLSLLAADGARATMRPS FPSKTFPNHYALVTGLPPDRNGIVENNMQDPAIPGVTFKMSNRPAVLDRRWWDQAEPIWVTAERAGVRSATLFWPGSEAD VRGVRPSRWLPYDEAMPNAARIARVLAWLDLPPDERPGLVTLYFHQVDTAGHDHGPDSPEVNAALGDVDEALGALVAGLE ARGLAANLLVVSDHGMAATSPDRRIFLEDLMPLDAGRTLAMGALMTLYPQPGRGAEVERALLKRHPHMDCWRKGEIPPRF RYGANPRVAPIFCLPQTGWSITTRAWVAKAKPEPGAHGYDPAHPDMAAIFVAHGPAFRKGVRAPDFDNVDVYPLLARLLG LRPAANDGDLDELGTVLTR
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI170650661, Length=396, Percent_Identity=36.6161616161616, Blast_Score=255, Evalue=6e-68, Organism=Homo sapiens, GI11034849, Length=398, Percent_Identity=34.6733668341709, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI111160296, Length=401, Percent_Identity=35.6608478802993, Blast_Score=248, Evalue=1e-65, Organism=Homo sapiens, GI7662358, Length=418, Percent_Identity=33.9712918660287, Blast_Score=237, Evalue=1e-62, Organism=Homo sapiens, GI91823602, Length=394, Percent_Identity=33.502538071066, Blast_Score=227, Evalue=2e-59, Organism=Homo sapiens, GI195947389, Length=394, Percent_Identity=33.502538071066, Blast_Score=226, Evalue=2e-59, Organism=Homo sapiens, GI45545421, Length=408, Percent_Identity=34.8039215686275, Blast_Score=209, Evalue=4e-54, Organism=Homo sapiens, GI91823274, Length=446, Percent_Identity=29.5964125560538, Blast_Score=203, Evalue=2e-52, Organism=Homo sapiens, GI23503267, Length=394, Percent_Identity=30.9644670050761, Blast_Score=192, Evalue=4e-49, Organism=Homo sapiens, GI310110107, Length=418, Percent_Identity=26.7942583732057, Blast_Score=154, Evalue=2e-37, Organism=Caenorhabditis elegans, GI115533126, Length=387, Percent_Identity=33.0749354005168, Blast_Score=207, Evalue=8e-54, Organism=Caenorhabditis elegans, GI115533128, Length=387, Percent_Identity=33.0749354005168, Blast_Score=207, Evalue=9e-54, Organism=Caenorhabditis elegans, GI212646262, Length=387, Percent_Identity=33.0749354005168, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI115533130, Length=386, Percent_Identity=34.1968911917098, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI115533132, Length=386, Percent_Identity=34.1968911917098, Blast_Score=206, Evalue=3e-53, Organism=Caenorhabditis elegans, GI71981768, Length=413, Percent_Identity=27.3607748184019, Blast_Score=142, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6319874, Length=435, Percent_Identity=30.3448275862069, Blast_Score=159, Evalue=8e-40, Organism=Saccharomyces cerevisiae, GI6320821, Length=467, Percent_Identity=29.3361884368308, Blast_Score=142, Evalue=8e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45558; Mature: 45426
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRYEAAMRLVSLLAFLLLAACAALPSGGSPDRLSASPPERPPVILISIDGFRADYLDR CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHC GVTPTLSLLAADGARATMRPSFPSKTFPNHYALVTGLPPDRNGIVENNMQDPAIPGVTFK CCCHHHHEEECCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE MSNRPAVLDRRWWDQAEPIWVTAERAGVRSATLFWPGSEADVRGVRPSRWLPYDEAMPNA ECCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCH ARIARVLAWLDLPPDERPGLVTLYFHQVDTAGHDHGPDSPEVNAALGDVDEALGALVAGL HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EARGLAANLLVVSDHGMAATSPDRRIFLEDLMPLDAGRTLAMGALMTLYPQPGRGAEVER HCCCCEEEEEEEECCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH ALLKRHPHMDCWRKGEIPPRFRYGANPRVAPIFCLPQTGWSITTRAWVAKAKPEPGAHGY HHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHEEEEECCCCCCCCCC DPAHPDMAAIFVAHGPAFRKGVRAPDFDNVDVYPLLARLLGLRPAANDGDLDELGTVLTR CCCCCCEEEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure AGRYEAAMRLVSLLAFLLLAACAALPSGGSPDRLSASPPERPPVILISIDGFRADYLDR CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHC GVTPTLSLLAADGARATMRPSFPSKTFPNHYALVTGLPPDRNGIVENNMQDPAIPGVTFK CCCHHHHEEECCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE MSNRPAVLDRRWWDQAEPIWVTAERAGVRSATLFWPGSEADVRGVRPSRWLPYDEAMPNA ECCCCCCHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCCCH ARIARVLAWLDLPPDERPGLVTLYFHQVDTAGHDHGPDSPEVNAALGDVDEALGALVAGL HHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH EARGLAANLLVVSDHGMAATSPDRRIFLEDLMPLDAGRTLAMGALMTLYPQPGRGAEVER HCCCCEEEEEEEECCCCCCCCCCCEEHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHH ALLKRHPHMDCWRKGEIPPRFRYGANPRVAPIFCLPQTGWSITTRAWVAKAKPEPGAHGY HHHHHCCCCCHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEHEEEEECCCCCCCCCC DPAHPDMAAIFVAHGPAFRKGVRAPDFDNVDVYPLLARLLGLRPAANDGDLDELGTVLTR CCCCCCEEEEEEECCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA