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The map label for this gene is cycA [H]

Identifier: 197104654

GI number: 197104654

Start: 1365412

End: 1365918

Strand: Reverse

Name: cycA [H]

Synonym: PHZ_c1188

Alternate gene names: 197104654

Gene position: 1365918-1365412 (Counterclockwise)

Preceding gene: 197104655

Following gene: 197104649

Centisome position: 34.18

GC content: 71.2

Gene sequence:

>507_bases
ATGCGCCGTCTGGGACCGATCCTCGCCACCGCCGTCGTCGCGGCCGCCCTCGCCTCGTGCGGCAAGTCGTCGACGGAGCA
GGCCCCGGGCGAGGCTCCGGCGGGGTCCGGCCAGGCCGCCGCGCCCGAACTCACCGACGAGCAGGCGCAGAAGGTCCTCG
CCACCCTGCCTGCGCCCTACAACACCGCGGACCTGGCGAACGGCAAGGCGAAGTTCGCCCTCTGCCGCTCGTGCCACACG
ATCACGCCCGGCGGCGCCAACATGACCGGCCCGAACCTGCACGGCGTGTTCGGCCGCAAGGCGGCCCAGGTCGAAGGCTT
CCGGTACTCCGACGCGCTGCAGAACGCCGACATCGTCTGGGACGGGCCGCACCTCGACGAGTGGCTGGCCAAGCCGATGA
CCTACCTGCCCGGCACCAAGATGTCGTTCGCGGGGCTGAAGGACGCCAAGGACCGGACCGACCTGATCGCCTTCCTGATG
GTCGAGACTCGTGGGACGGCCCAGTAG

Upstream 100 bases:

>100_bases
TGGACGAGGCGGTGAACCGCGAGCGGCGGCGCCGGCGCTGACGCTCGCTTGAATCGGCGCGGCTTCGCGCTAGCTTGCGC
CGCCATTCAGGGAGATATCC

Downstream 100 bases:

>100_bases
GAATTCACGCGACGCGAGCAGAATTCGGCAATAGACAACCTTGACGCGCATAGACGGGCGGCGCATTGTCCGTCGGTCGA
TCACTGCATCTGTCGACAAC

Product: cytochrome c family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MRRLGPILATAVVAAALASCGKSSTEQAPGEAPAGSGQAAAPELTDEQAQKVLATLPAPYNTADLANGKAKFALCRSCHT
ITPGGANMTGPNLHGVFGRKAAQVEGFRYSDALQNADIVWDGPHLDEWLAKPMTYLPGTKMSFAGLKDAKDRTDLIAFLM
VETRGTAQ

Sequences:

>Translated_168_residues
MRRLGPILATAVVAAALASCGKSSTEQAPGEAPAGSGQAAAPELTDEQAQKVLATLPAPYNTADLANGKAKFALCRSCHT
ITPGGANMTGPNLHGVFGRKAAQVEGFRYSDALQNADIVWDGPHLDEWLAKPMTYLPGTKMSFAGLKDAKDRTDLIAFLM
VETRGTAQ
>Mature_168_residues
MRRLGPILATAVVAAALASCGKSSTEQAPGEAPAGSGQAAAPELTDEQAQKVLATLPAPYNTADLANGKAKFALCRSCHT
ITPGGANMTGPNLHGVFGRKAAQVEGFRYSDALQNADIVWDGPHLDEWLAKPMTYLPGTKMSFAGLKDAKDRTDLIAFLM
VETRGTAQ

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=98, Percent_Identity=47.9591836734694, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17566554, Length=100, Percent_Identity=49, Blast_Score=96, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17539604, Length=112, Percent_Identity=43.75, Blast_Score=93, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6320796, Length=85, Percent_Identity=54.1176470588235, Blast_Score=115, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6322508, Length=85, Percent_Identity=50.5882352941176, Blast_Score=108, Evalue=4e-25,
Organism=Drosophila melanogaster, GI17137204, Length=99, Percent_Identity=49.4949494949495, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=47.5728155339806, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 17570; Mature: 17570

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLGPILATAVVAAALASCGKSSTEQAPGEAPAGSGQAAAPELTDEQAQKVLATLPAPY
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
NTADLANGKAKFALCRSCHTITPGGANMTGPNLHGVFGRKAAQVEGFRYSDALQNADIVW
CCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCCHHHHCCCCEEE
DGPHLDEWLAKPMTYLPGTKMSFAGLKDAKDRTDLIAFLMVETRGTAQ
CCCCHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCC
>Mature Secondary Structure
MRRLGPILATAVVAAALASCGKSSTEQAPGEAPAGSGQAAAPELTDEQAQKVLATLPAPY
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
NTADLANGKAKFALCRSCHTITPGGANMTGPNLHGVFGRKAAQVEGFRYSDALQNADIVW
CCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCHHHCCCCCCHHHHCCCCEEE
DGPHLDEWLAKPMTYLPGTKMSFAGLKDAKDRTDLIAFLMVETRGTAQ
CCCCHHHHHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1697576; 174109; 7674304 [H]