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The map label for this gene is selU [H]

Identifier: 197104650

GI number: 197104650

Start: 1358702

End: 1359787

Strand: Direct

Name: selU [H]

Synonym: PHZ_c1184

Alternate gene names: 197104650

Gene position: 1358702-1359787 (Clockwise)

Preceding gene: 197104648

Following gene: 197104651

Centisome position: 34.0

GC content: 73.57

Gene sequence:

>1086_bases
ATGGGCCCGAAGGTCACCGACGAGATTTCGCGCGAGGCGCTGGCGCGCTTCGACATGGTGATCGACGTGCGCAGTCCCTC
CGAGTTCACCGAGGACCATGTGCCCGGGGCCGTGAACCTGCCGGTGCTCACCGACGCCGAGCGGGCGGAGGTCGGGACGA
TCTACGTCCAGGAGTCGCGTTTCAAGGCGCGCCGGATCGGGGCGGCCTATGTCGCCCGCAACGTCGCCCGGCACCTGGAG
ACGGCGCTGGCCGACAAGCCCGGCGGCTTCGCGCCGCTGGTCTACTGCTGGCGGGGCGGCATGCGCTCGAACGCCATGGC
CCTGATCCTGGCCCAGGTGGGCTGGCGCACCAGCGTGCTCGCCGGCGGCTACCGGACCTACCGCCGCCATGTCGTCGAGC
GGCTTTACGACGGAAGGCTCGGCCTCGACTTCGTGCTGCTGGACGGCCAGACCGGCTCGGCCAAGACCGAGATCCTCGGG
CTGCTGGCCGCCCGCGACGTGCAGACGCTGGACCTGGAGGGCCTGGCCGAACATCGCGGCTCCCTGTTCGGCGCCCTGAA
GGGGCGGCCGCAGCCCAGCCAGAAGCTGTTCGAGAGCCGGCTGCTGGCCGCGCTCGACGCGCTGGATCCCGCGCGCCCGG
TCGTCGCCGAGGCCGAATCCAGCAAGATCGGCGAGCGCATCCTGCCGCCCGCGCTCTGGGCGCGGCTGGCGGCCGCGCCG
CGGATCGAGCTTGCGGCCGAGCCGGCGGCCCGCGCCCGGTATCTGGTGGGCGCGTACAGCGACCTGATCGCCGACCGCGC
CGCCCTCGACGAGGGGTTCCTGCGGCTGCCGGTCCATCCCAGCCGCGAGCGCCTGGAGAACTGGCGGGCGCTGGCGGACG
CCGGGCGGTTCGCCGACTTGGCCGAGGCGGTCATGGCGCTGCACTACGACCCCGCCTACGAGCGCGCCCGCAAGAAGCAC
GGCCGGCCCCTCGTCGGGCGCATCGCCCTCGATCCCTGCCGTCCGGAAGAGCGGGAGACCGCGGCGGACGTCGTGGCCGA
TCTGGTGGCCCGGCTTGACGCTGCGCCGCGGCGGCGCGAGGCTTAA

Upstream 100 bases:

>100_bases
CCAGCTTGCAGCCGCAGCCGCCGCCGTGGGCGAGGGAGGTGAGACGCACAGGTCCGGACATGGGCTCTCCGTCGTTCGAG
AAGCGCGCTATAGCACCGGC

Downstream 100 bases:

>100_bases
CGGCGATAATCAAGGACAAGGGAGACGGCCCATGGCGGACGGATCGGTCGCGGGCGTGACCTCGCTGAAGGGCAAGGTGA
GCGCCGAGGAATGGCAGGCG

Product: rhodanese-like protein

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MGPKVTDEISREALARFDMVIDVRSPSEFTEDHVPGAVNLPVLTDAERAEVGTIYVQESRFKARRIGAAYVARNVARHLE
TALADKPGGFAPLVYCWRGGMRSNAMALILAQVGWRTSVLAGGYRTYRRHVVERLYDGRLGLDFVLLDGQTGSAKTEILG
LLAARDVQTLDLEGLAEHRGSLFGALKGRPQPSQKLFESRLLAALDALDPARPVVAEAESSKIGERILPPALWARLAAAP
RIELAAEPAARARYLVGAYSDLIADRAALDEGFLRLPVHPSRERLENWRALADAGRFADLAEAVMALHYDPAYERARKKH
GRPLVGRIALDPCRPEERETAADVVADLVARLDAAPRRREA

Sequences:

>Translated_361_residues
MGPKVTDEISREALARFDMVIDVRSPSEFTEDHVPGAVNLPVLTDAERAEVGTIYVQESRFKARRIGAAYVARNVARHLE
TALADKPGGFAPLVYCWRGGMRSNAMALILAQVGWRTSVLAGGYRTYRRHVVERLYDGRLGLDFVLLDGQTGSAKTEILG
LLAARDVQTLDLEGLAEHRGSLFGALKGRPQPSQKLFESRLLAALDALDPARPVVAEAESSKIGERILPPALWARLAAAP
RIELAAEPAARARYLVGAYSDLIADRAALDEGFLRLPVHPSRERLENWRALADAGRFADLAEAVMALHYDPAYERARKKH
GRPLVGRIALDPCRPEERETAADVVADLVARLDAAPRRREA
>Mature_360_residues
GPKVTDEISREALARFDMVIDVRSPSEFTEDHVPGAVNLPVLTDAERAEVGTIYVQESRFKARRIGAAYVARNVARHLET
ALADKPGGFAPLVYCWRGGMRSNAMALILAQVGWRTSVLAGGYRTYRRHVVERLYDGRLGLDFVLLDGQTGSAKTEILGL
LAARDVQTLDLEGLAEHRGSLFGALKGRPQPSQKLFESRLLAALDALDPARPVVAEAESSKIGERILPPALWARLAAAPR
IELAAEPAARARYLVGAYSDLIADRAALDEGFLRLPVHPSRERLENWRALADAGRFADLAEAVMALHYDPAYERARKKHG
RPLVGRIALDPCRPEERETAADVVADLVARLDAAPRRREA

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=246, Percent_Identity=35.3658536585366, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39619; Mature: 39488

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS00380 RHODANESE_1 ; PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPKVTDEISREALARFDMVIDVRSPSEFTEDHVPGAVNLPVLTDAERAEVGTIYVQESR
CCCCCHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCEECCCCCCCEEEEEEECCH
FKARRIGAAYVARNVARHLETALADKPGGFAPLVYCWRGGMRSNAMALILAQVGWRTSVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHH
AGGYRTYRRHVVERLYDGRLGLDFVLLDGQTGSAKTEILGLLAARDVQTLDLEGLAEHRG
HCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
SLFGALKGRPQPSQKLFESRLLAALDALDPARPVVAEAESSKIGERILPPALWARLAAAP
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCC
RIELAAEPAARARYLVGAYSDLIADRAALDEGFLRLPVHPSRERLENWRALADAGRFADL
CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCHHHHH
AEAVMALHYDPAYERARKKHGRPLVGRIALDPCRPEERETAADVVADLVARLDAAPRRRE
HHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
A
C
>Mature Secondary Structure 
GPKVTDEISREALARFDMVIDVRSPSEFTEDHVPGAVNLPVLTDAERAEVGTIYVQESR
CCCCHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCCCCEECCCCCCCEEEEEEECCH
FKARRIGAAYVARNVARHLETALADKPGGFAPLVYCWRGGMRSNAMALILAQVGWRTSVL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHHH
AGGYRTYRRHVVERLYDGRLGLDFVLLDGQTGSAKTEILGLLAARDVQTLDLEGLAEHRG
HCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
SLFGALKGRPQPSQKLFESRLLAALDALDPARPVVAEAESSKIGERILPPALWARLAAAP
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHCCCHHHHHHHHCCC
RIELAAEPAARARYLVGAYSDLIADRAALDEGFLRLPVHPSRERLENWRALADAGRFADL
CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHCCHHHHH
AEAVMALHYDPAYERARKKHGRPLVGRIALDPCRPEERETAADVVADLVARLDAAPRRRE
HHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA