| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is yxbG [H]
Identifier: 197104623
GI number: 197104623
Start: 1329243
End: 1330013
Strand: Direct
Name: yxbG [H]
Synonym: PHZ_c1157
Alternate gene names: 197104623
Gene position: 1329243-1330013 (Clockwise)
Preceding gene: 197104621
Following gene: 197104625
Centisome position: 33.26
GC content: 71.08
Gene sequence:
>771_bases ATGGACCTGCAGCTCAAAGGGAAGACCGCGGTGGTGACCGGCGGGACGCGCGGCATCGGCCGCAGCATCGCCGAGTGCTT CGCGGACGAGGGCGCCAACGTGGCGGTGTGCGCCCGCCACGCCGACCAGGTCGCCGAGACGGTCAAGGCGCTGGAGGCCC GGGGCGTGAAGGCCTGGGGGCAGCCGGCCGACATCGCCGACAAGGCCAGCCTGCAGGCGTTCGTCCGCGGCGCCGCCGAG GCGCTGGGGGGTGTCGACGTGCTGGTCTCCAACGCCAGCGCCCTGGTGCAGGGCGTGACCGACGAGGACTGGCGGGCGAT GTTCGAGGTGGACCTGCTGGGGGCGGTCCGCAGCTTCGAGGCGGCCAAGCCCTATCTCGAGAAGGCCGCCGCGGCCAACG GCGACGCCTGCTTCATCCTGACCTCCTCGATCTCGGCCGCGGAGGCGACGAACGCCTCCTCGTACGGTGCGATCAAGGCC GCGCTGATCCACTACGCCAAGGGCGTGGCCCGCGAGAACGCGGCCAAGGGGCTGCGCTGCAACGTGGTCTCCCCCGGGAC CGTGCTGTTCGACGGCGGCGTGTGGGGCAACGTGCGCGACAACATGCCGGACTTCTTCGCCCAGATGATCAAGCGCAACC CCACCGGGCGCATGGCCACGCCCGAGGAGATCGCGGCGGCCACGGTGTTCCTCGCCAGTCCCCGGTCGGCCTTCACCACC GGGATCAACATGGTGGTGGACGGGGCGATCTCGTCGCGGGTGAACTTCTAG
Upstream 100 bases:
>100_bases CGGACGCGGCGCCCCGCCGGCTCGCGGGCTGACCTAGCGGCGCCGCTGGCGTCGGGGCCGGCGCTGGGGCAGGTTCGCGG CCGAACGAGGGAGTGAAGCC
Downstream 100 bases:
>100_bases CGGCGCCTCAGGCCGAGACGTTGTCGAACAGGCCGGCCTGGTAGTCGCGGATCGCCTCCACGATCTCCTCGCGGGTGTTC ATCACGAAGGGCCCGTGCGC
Product: putative oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 256; Mature: 256
Protein sequence:
>256_residues MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARHADQVAETVKALEARGVKAWGQPADIADKASLQAFVRGAAE ALGGVDVLVSNASALVQGVTDEDWRAMFEVDLLGAVRSFEAAKPYLEKAAAANGDACFILTSSISAAEATNASSYGAIKA ALIHYAKGVARENAAKGLRCNVVSPGTVLFDGGVWGNVRDNMPDFFAQMIKRNPTGRMATPEEIAAATVFLASPRSAFTT GINMVVDGAISSRVNF
Sequences:
>Translated_256_residues MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARHADQVAETVKALEARGVKAWGQPADIADKASLQAFVRGAAE ALGGVDVLVSNASALVQGVTDEDWRAMFEVDLLGAVRSFEAAKPYLEKAAAANGDACFILTSSISAAEATNASSYGAIKA ALIHYAKGVARENAAKGLRCNVVSPGTVLFDGGVWGNVRDNMPDFFAQMIKRNPTGRMATPEEIAAATVFLASPRSAFTT GINMVVDGAISSRVNF >Mature_256_residues MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARHADQVAETVKALEARGVKAWGQPADIADKASLQAFVRGAAE ALGGVDVLVSNASALVQGVTDEDWRAMFEVDLLGAVRSFEAAKPYLEKAAAANGDACFILTSSISAAEATNASSYGAIKA ALIHYAKGVARENAAKGLRCNVVSPGTVLFDGGVWGNVRDNMPDFFAQMIKRNPTGRMATPEEIAAATVFLASPRSAFTT GINMVVDGAISSRVNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=29.0697674418605, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=26.0536398467433, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=29.3172690763052, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI7705925, Length=256, Percent_Identity=31.640625, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=30, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=32.046332046332, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=31.6062176165803, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=24.8, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=29.1891891891892, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=203, Percent_Identity=29.5566502463054, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=32.6241134751773, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=33.8709677419355, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=31.3492063492063, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=30.3149606299213, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=30.1158301158301, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=31.2741312741313, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=32.295719844358, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=29.9212598425197, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=25.2918287937743, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=25.6916996047431, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=27.3092369477912, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=29.9595141700405, Blast_Score=71, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=34.2307692307692, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17561402, Length=265, Percent_Identity=27.9245283018868, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=27.6264591439689, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17551412, Length=272, Percent_Identity=29.7794117647059, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.8352059925094, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=30.9701492537313, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=31.8007662835249, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=30.5660377358491, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=30.0751879699248, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562904, Length=269, Percent_Identity=30.1115241635688, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=29.6577946768061, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538480, Length=277, Percent_Identity=27.7978339350181, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.277566539924, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=28.5171102661597, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.4644194756554, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17536025, Length=263, Percent_Identity=30.4182509505703, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17565030, Length=269, Percent_Identity=28.996282527881, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI25147288, Length=262, Percent_Identity=29.7709923664122, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=27.5471698113208, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=28.2527881040892, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562908, Length=261, Percent_Identity=28.735632183908, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17555706, Length=260, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=29.1044776119403, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=27.0588235294118, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=27.843137254902, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI71982365, Length=134, Percent_Identity=34.3283582089552, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17568967, Length=230, Percent_Identity=26.9565217391304, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=203, Percent_Identity=31.0344827586207, Blast_Score=73, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=24.7058823529412, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=254, Percent_Identity=25.1968503937008, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.596837944664, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21355319, Length=259, Percent_Identity=27.7992277992278, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=31.0756972111554, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=27.0916334661355, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI24644339, Length=266, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=28.8, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=27.5590551181102, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI18859837, Length=200, Percent_Identity=31.5, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24665243, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI221331218, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357673, Length=249, Percent_Identity=25.3012048192771, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=30.2564102564103, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI221331216, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26571; Mature: 26571
Theoretical pI: Translated: 5.85; Mature: 5.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARHADQVAETVKALEARGVKAWG CCEEECCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC QPADIADKASLQAFVRGAAEALGGVDVLVSNASALVQGVTDEDWRAMFEVDLLGAVRSFE CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AAKPYLEKAAAANGDACFILTSSISAAEATNASSYGAIKAALIHYAKGVARENAAKGLRC HHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE NVVSPGTVLFDGGVWGNVRDNMPDFFAQMIKRNPTGRMATPEEIAAATVFLASPRSAFTT EEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCHHHHH GINMVVDGAISSRVNF HHHHEEECHHHHCCCC >Mature Secondary Structure MDLQLKGKTAVVTGGTRGIGRSIAECFADEGANVAVCARHADQVAETVKALEARGVKAWG CCEEECCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC QPADIADKASLQAFVRGAAEALGGVDVLVSNASALVQGVTDEDWRAMFEVDLLGAVRSFE CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AAKPYLEKAAAANGDACFILTSSISAAEATNASSYGAIKAALIHYAKGVARENAAKGLRC HHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE NVVSPGTVLFDGGVWGNVRDNMPDFFAQMIKRNPTGRMATPEEIAAATVFLASPRSAFTT EEECCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCHHHHH GINMVVDGAISSRVNF HHHHEEECHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7584049; 9384377 [H]