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The map label for this gene is ydiD [C]

Identifier: 197104594

GI number: 197104594

Start: 1290379

End: 1292229

Strand: Direct

Name: ydiD [C]

Synonym: PHZ_c1128

Alternate gene names: 197104594

Gene position: 1290379-1292229 (Clockwise)

Preceding gene: 197104592

Following gene: 197104595

Centisome position: 32.29

GC content: 70.83

Gene sequence:

>1851_bases
ATGAGCCCAGCCGACGATGCGGGCGCCGCCATCGCGTCCAAGCCGCCGTTCAAGCCGCTGCCGCAGAAGGCGCCGGACGT
TTCGGTCGAGCGCCGGGCGGACGGCAGCTACATCATCCGCTCCAACCATCCGCCGGGCGAGGGGCCGCGCTCGATCGCGC
ACCTCCTGGCCGAACGCGCCGCGCAGCATCCCGACCGGCCCTACATCCTGCAGCGCGCGCCGAACCACGGTCCCTGGACC
GGCGTCACCTACGGCGAGGCCAAGCGCGCCGCCGACGGGATCGCCCAGTGGCTGCTGGACCGCGGCCTGGGCGGCGAGGA
CAGCGTGATGGTGCTGTCGGCCAACTCGGTCGAGCACGCCCTCGTGATGCTGGGCTGCTACACCGCCGGCGTGCCGGTGG
CGCCGATCAGCCCGGCCTACAGCCTGATCTCGTCCGACCACGCCAAGCTGAAGCACTGCTTCGCCACCGTCCGGCCCAAG
GTGGTGTTCGCCCAGTCCAGCGAGATGTTCGCCCGCGCCTTCGAGACGCTGCGGGCGCTGGACCCCACCCTCGCATTCGT
GACCGTCGATGGCGGGAACGGGACGATCCCGCTTTCCGAACTCGCCTCCACCACGCCCGGCGAGGCGGTCGAGGCGGCGC
GCGAGGCCCTGCACCACGGGACCGTCGCCAAGTACCTGTTCACCTCGGGCTCCACCGGCATGCCCAAGGGCGTGCCCCAG
ACACACGGCATGTTCGCGGGCGTCATCGCCGGCCAGGAGGGCCTGCGCGACGAGGCGCCCGATCCGGACAATCCGCCCCA
GGCGCTGGACTGGATGCCCTGGAGCCACATCTCGGCCGGCAACATCGCCTTCAACGGCAACCTCTGGGCGGGCGGGACCC
TGCACCTGGACGAGGGCAAGCCGATCCCGGGCATGTTCGAGACCACGATCAAGAACCTCTACGAGGTCTCCCCCTGGGTG
TTCGGCTCGGCGCCGGTGGCCTTCGGCATGCTGGCCGAGGCGATGGAGCAGGACCCCGTGCTGCGCCGGAGCTTCTTCAG
GAACCTGCGCTACATGGGCTACGGCGGCGCGACGCTGTCGAACGACATCTATGAGCGGATGCAGGCGCTGGCGATCGCCG
AGACCGGCCACCGCATCCCGCTGACCACCATGTACGGCGCGACCGAGACGCAGGGGATCACGGTCGTCCACTGGGTGACC
GAGCGGGTGGGCCTGATCGGCCTGCCGCTGCCGGGCATCACCCTGAAGCTCGCGCCCAGCGGCTCCAAGCTGGAGGTGCG
GGTGAAGGGGCCGACGGTCACCAGCGGCTACCACAACGACCCCGAGAAGACCGCCCAGGCCTTCGACGAGGAGGGCTTCT
ACAAGCTGGGCGACGCCTGCCGGTTCCTCGATCCGGACGATCCCGCGCAGGGGCTGGTGTTCGACGGCCGGGTGACCGAG
GACTTCAAGCTGGATTCCGGCACCTGGGTGTCGGTCGGCACGCTCAGGCCCGACCTGGTGGCCGCCTGCAGCCCCTACGT
CTTCGACATCGTCGTCGCGGGCCAGGACAAGCCCTTCGTCGGCGCGCTGGTGTGGCCGGCGCCGGCGGCGCTCGGGTCGC
TGGGCGAGGATCCGCTCGGCAAGCTGACCGAGATCTTGAAGGAGCGGCTGGGGGCCTTCAACAAGAGCGCCGGTGGATCG
TCGCGGCAGGTCGGCCGGTTCCTGGTCATGACCGAGCCGCCGTCGATCGACGCGGGCGAGATCACCGACAAGGGCTATGT
GAACCAGCGCGCCACGCTGGAGCGGCGCCAGGCGCTGGTGGACGCGCTGTACGCCGACCCGCCGGGGCCGGGCGTGGTGA
GCCTGCGCTAG

Upstream 100 bases:

>100_bases
GGGAATGGAAGCGTGGCCCCCTTACGTGGCGTCGGCGTTGCGGGCGGGGCGCATTGGCATAGGCTTGGGCCCAAGAACCA
AAGACAACGGGAGGATCGCC

Downstream 100 bases:

>100_bases
GATGGCCGGGATCGTCCTGCACCACTACGACACCTCGCCCTTCTCGGAGAAGGTGCGGGTGATGCTGGGCGTGAAGGGCC
TCGAGTGGCGCTCGGTGATC

Product: acyl-CoA synthetase

Products: NA

Alternate protein names: Long-chain acyl-CoA synthetase; LACS [H]

Number of amino acids: Translated: 616; Mature: 615

Protein sequence:

>616_residues
MSPADDAGAAIASKPPFKPLPQKAPDVSVERRADGSYIIRSNHPPGEGPRSIAHLLAERAAQHPDRPYILQRAPNHGPWT
GVTYGEAKRAADGIAQWLLDRGLGGEDSVMVLSANSVEHALVMLGCYTAGVPVAPISPAYSLISSDHAKLKHCFATVRPK
VVFAQSSEMFARAFETLRALDPTLAFVTVDGGNGTIPLSELASTTPGEAVEAAREALHHGTVAKYLFTSGSTGMPKGVPQ
THGMFAGVIAGQEGLRDEAPDPDNPPQALDWMPWSHISAGNIAFNGNLWAGGTLHLDEGKPIPGMFETTIKNLYEVSPWV
FGSAPVAFGMLAEAMEQDPVLRRSFFRNLRYMGYGGATLSNDIYERMQALAIAETGHRIPLTTMYGATETQGITVVHWVT
ERVGLIGLPLPGITLKLAPSGSKLEVRVKGPTVTSGYHNDPEKTAQAFDEEGFYKLGDACRFLDPDDPAQGLVFDGRVTE
DFKLDSGTWVSVGTLRPDLVAACSPYVFDIVVAGQDKPFVGALVWPAPAALGSLGEDPLGKLTEILKERLGAFNKSAGGS
SRQVGRFLVMTEPPSIDAGEITDKGYVNQRATLERRQALVDALYADPPGPGVVSLR

Sequences:

>Translated_616_residues
MSPADDAGAAIASKPPFKPLPQKAPDVSVERRADGSYIIRSNHPPGEGPRSIAHLLAERAAQHPDRPYILQRAPNHGPWT
GVTYGEAKRAADGIAQWLLDRGLGGEDSVMVLSANSVEHALVMLGCYTAGVPVAPISPAYSLISSDHAKLKHCFATVRPK
VVFAQSSEMFARAFETLRALDPTLAFVTVDGGNGTIPLSELASTTPGEAVEAAREALHHGTVAKYLFTSGSTGMPKGVPQ
THGMFAGVIAGQEGLRDEAPDPDNPPQALDWMPWSHISAGNIAFNGNLWAGGTLHLDEGKPIPGMFETTIKNLYEVSPWV
FGSAPVAFGMLAEAMEQDPVLRRSFFRNLRYMGYGGATLSNDIYERMQALAIAETGHRIPLTTMYGATETQGITVVHWVT
ERVGLIGLPLPGITLKLAPSGSKLEVRVKGPTVTSGYHNDPEKTAQAFDEEGFYKLGDACRFLDPDDPAQGLVFDGRVTE
DFKLDSGTWVSVGTLRPDLVAACSPYVFDIVVAGQDKPFVGALVWPAPAALGSLGEDPLGKLTEILKERLGAFNKSAGGS
SRQVGRFLVMTEPPSIDAGEITDKGYVNQRATLERRQALVDALYADPPGPGVVSLR
>Mature_615_residues
SPADDAGAAIASKPPFKPLPQKAPDVSVERRADGSYIIRSNHPPGEGPRSIAHLLAERAAQHPDRPYILQRAPNHGPWTG
VTYGEAKRAADGIAQWLLDRGLGGEDSVMVLSANSVEHALVMLGCYTAGVPVAPISPAYSLISSDHAKLKHCFATVRPKV
VFAQSSEMFARAFETLRALDPTLAFVTVDGGNGTIPLSELASTTPGEAVEAAREALHHGTVAKYLFTSGSTGMPKGVPQT
HGMFAGVIAGQEGLRDEAPDPDNPPQALDWMPWSHISAGNIAFNGNLWAGGTLHLDEGKPIPGMFETTIKNLYEVSPWVF
GSAPVAFGMLAEAMEQDPVLRRSFFRNLRYMGYGGATLSNDIYERMQALAIAETGHRIPLTTMYGATETQGITVVHWVTE
RVGLIGLPLPGITLKLAPSGSKLEVRVKGPTVTSGYHNDPEKTAQAFDEEGFYKLGDACRFLDPDDPAQGLVFDGRVTED
FKLDSGTWVSVGTLRPDLVAACSPYVFDIVVAGQDKPFVGALVWPAPAALGSLGEDPLGKLTEILKERLGAFNKSAGGSS
RQVGRFLVMTEPPSIDAGEITDKGYVNQRATLERRQALVDALYADPPGPGVVSLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17541856, Length=519, Percent_Identity=25.0481695568401, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI193204819, Length=538, Percent_Identity=22.8624535315985, Blast_Score=90, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17556552, Length=424, Percent_Identity=25.4716981132075, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648260, Length=426, Percent_Identity=26.2910798122066, Blast_Score=84, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.3 [H]

Molecular weight: Translated: 65779; Mature: 65648

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPADDAGAAIASKPPFKPLPQKAPDVSVERRADGSYIIRSNHPPGEGPRSIAHLLAERA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCHHHHHHHHHHHH
AQHPDRPYILQRAPNHGPWTGVTYGEAKRAADGIAQWLLDRGLGGEDSVMVLSANSVEHA
HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
LVMLGCYTAGVPVAPISPAYSLISSDHAKLKHCFATVRPKVVFAQSSEMFARAFETLRAL
HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC
DPTLAFVTVDGGNGTIPLSELASTTPGEAVEAAREALHHGTVAKYLFTSGSTGMPKGVPQ
CCEEEEEEEECCCCCEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCC
THGMFAGVIAGQEGLRDEAPDPDNPPQALDWMPWSHISAGNIAFNGNLWAGGTLHLDEGK
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCEEECCCCC
PIPGMFETTIKNLYEVSPWVFGSAPVAFGMLAEAMEQDPVLRRSFFRNLRYMGYGGATLS
CCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCHHH
NDIYERMQALAIAETGHRIPLTTMYGATETQGITVVHWVTERVGLIGLPLPGITLKLAPS
HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEHHCCCEEECCCCCCEEEECCC
GSKLEVRVKGPTVTSGYHNDPEKTAQAFDEEGFYKLGDACRFLDPDDPAQGLVFDGRVTE
CCEEEEEECCCEEECCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCEEECCCCCC
DFKLDSGTWVSVGTLRPDLVAACSPYVFDIVVAGQDKPFVGALVWPAPAALGSLGEDPLG
CEECCCCCEEEECCCCHHHHHHCCCEEEEEEEECCCCCEEEEEECCCHHHHHCCCCCHHH
KLTEILKERLGAFNKSAGGSSRQVGRFLVMTEPPSIDAGEITDKGYVNQRATLERRQALV
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DALYADPPGPGVVSLR
HHHHCCCCCCCEEEEC
>Mature Secondary Structure 
SPADDAGAAIASKPPFKPLPQKAPDVSVERRADGSYIIRSNHPPGEGPRSIAHLLAERA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCHHHHHHHHHHHH
AQHPDRPYILQRAPNHGPWTGVTYGEAKRAADGIAQWLLDRGLGGEDSVMVLSANSVEHA
HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
LVMLGCYTAGVPVAPISPAYSLISSDHAKLKHCFATVRPKVVFAQSSEMFARAFETLRAL
HHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHC
DPTLAFVTVDGGNGTIPLSELASTTPGEAVEAAREALHHGTVAKYLFTSGSTGMPKGVPQ
CCEEEEEEEECCCCCEEHHHHHCCCCCHHHHHHHHHHHCCHHHHHEEECCCCCCCCCCCC
THGMFAGVIAGQEGLRDEAPDPDNPPQALDWMPWSHISAGNIAFNGNLWAGGTLHLDEGK
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEECCCEEECCCCC
PIPGMFETTIKNLYEVSPWVFGSAPVAFGMLAEAMEQDPVLRRSFFRNLRYMGYGGATLS
CCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCHHHHHHHHHHCCEECCCCCHHH
NDIYERMQALAIAETGHRIPLTTMYGATETQGITVVHWVTERVGLIGLPLPGITLKLAPS
HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEEEEEEHHCCCEEECCCCCCEEEECCC
GSKLEVRVKGPTVTSGYHNDPEKTAQAFDEEGFYKLGDACRFLDPDDPAQGLVFDGRVTE
CCEEEEEECCCEEECCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCEEECCCCCC
DFKLDSGTWVSVGTLRPDLVAACSPYVFDIVVAGQDKPFVGALVWPAPAALGSLGEDPLG
CEECCCCCEEEECCCCHHHHHHCCCEEEEEEEECCCCCEEEEEECCCHHHHHCCCCCHHH
KLTEILKERLGAFNKSAGGSSRQVGRFLVMTEPPSIDAGEITDKGYVNQRATLERRQALV
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
DALYADPPGPGVVSLR
HHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]