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The map label for this gene is cspG [C]

Identifier: 197104417

GI number: 197104417

Start: 1046678

End: 1047430

Strand: Reverse

Name: cspG [C]

Synonym: PHZ_c0951

Alternate gene names: 197104417

Gene position: 1047430-1046678 (Counterclockwise)

Preceding gene: 197104422

Following gene: 197104416

Centisome position: 26.21

GC content: 68.26

Gene sequence:

>753_bases
GTGCCCGAAAGGGCGCTCCCCATAAGCCGTTTGGAGACCCGTGTCACTCGCGCTGGTGTTGGTCCCTTTCGCCAGCTACA
ACGTCGCCACGGCTCGTCGCGTGGATTGGCCGGACGTCGCGACGGAAAAGCGGCGGAAGACTTCTATCTCGGTAGGTTAC
GGCGAATGGCGAGCGGCACGGTCAAGTGGTTCAATACGGCCAAAGGCTTCGGTTTCATCCAACCTGACGACGGCGGACAA
GACGTCTTCGTCCATATCTCGGCGGTGGCTCAGGCGGGGCTCGACGCCCTGAACGAAGGCGACCAGGTCGAGTACGAACT
CGAACAGGACCGTCGGTCCGGCAAGCTGGCGGCGACCTCGATCGTCGTGACGGCGCAAGGCGCGCCTGCGCCGCGTCGCT
CGGGCGGCTTCGACCGCGGCGAGCGCAGCGGCGGCTTCGGCGGCGGCGGCGGTTACGGCGGCGGCGGCGGCGGCGGCTTC
GGCGGCGGCTCGCGCGGCGGCGGCTTCGGGGGCGATCGTCCCCGCGGCGCCGTGATGGGCTCGGGCTCGGGCGTGGTGAA
GTGGTTCAACCCGACCAAGGGCTTCGGCTTCATCAAGCCGGAAGGCGGCGGTCAGGACATCTTCGTCCACATCTCGGCCG
TCGAGCAGGCCGGCCTGTCGGGCCTCAACGAGGGCCAGACGGTCGACTTCGACCTGGAACAGGACCGTCGGTCGGGCAAG
ACCTCGGCGACGAACCTGAAGATCACCGGCTAA

Upstream 100 bases:

>100_bases
GTCCCGGCGGCGACGGCCTCTTCCATGAAGCGGGGGTCGGTTCCCGGGGAGGACCCGCAATAGATGCAGACGCTCTTCAC
GAGCAGCTCGACTCCAACCT

Downstream 100 bases:

>100_bases
CAACCGGACGGCGGAAACGGGCCTGGACGACCAGGCCCGTTTCCAGCCGTGCTGAAACGCGCGCGGGCGCAAGGCGTTGA
TCGTCCTCGAATTCGAGGGA

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MPERALPISRLETRVTRAGVGPFRQLQRRHGSSRGLAGRRDGKAAEDFYLGRLRRMASGTVKWFNTAKGFGFIQPDDGGQ
DVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGKLAATSIVVTAQGAPAPRRSGGFDRGERSGGFGGGGGYGGGGGGGF
GGGSRGGGFGGDRPRGAVMGSGSGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK
TSATNLKITG

Sequences:

>Translated_250_residues
MPERALPISRLETRVTRAGVGPFRQLQRRHGSSRGLAGRRDGKAAEDFYLGRLRRMASGTVKWFNTAKGFGFIQPDDGGQ
DVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGKLAATSIVVTAQGAPAPRRSGGFDRGERSGGFGGGGGYGGGGGGGF
GGGSRGGGFGGDRPRGAVMGSGSGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK
TSATNLKITG
>Mature_249_residues
PERALPISRLETRVTRAGVGPFRQLQRRHGSSRGLAGRRDGKAAEDFYLGRLRRMASGTVKWFNTAKGFGFIQPDDGGQD
VFVHISAVAQAGLDALNEGDQVEYELEQDRRSGKLAATSIVVTAQGAPAPRRSGGFDRGERSGGFGGGGGYGGGGGGGFG
GGSRGGGFGGDRPRGAVMGSGSGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGKT
SATNLKITG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=71, Percent_Identity=46.4788732394366, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789979, Length=51, Percent_Identity=56.8627450980392, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786841, Length=49, Percent_Identity=59.1836734693878, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787107, Length=51, Percent_Identity=58.8235294117647, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=50.7692307692308, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787834, Length=51, Percent_Identity=52.9411764705882, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787839, Length=51, Percent_Identity=52.9411764705882, Blast_Score=62, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=49.2063492063492, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 25979; Mature: 25848

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPERALPISRLETRVTRAGVGPFRQLQRRHGSSRGLAGRRDGKAAEDFYLGRLRRMASGT
CCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGKLAATS
EEEEECCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEHHHHCCCCEEEEE
IVVTAQGAPAPRRSGGFDRGERSGGFGGGGGYGGGGGGGFGGGSRGGGFGGDRPRGAVMG
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
SGSGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK
CCCCEEEECCCCCCCEEECCCCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCHHHHCCCC
TSATNLKITG
CCCCEEEEEC
>Mature Secondary Structure 
PERALPISRLETRVTRAGVGPFRQLQRRHGSSRGLAGRRDGKAAEDFYLGRLRRMASGT
CCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
VKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRRSGKLAATS
EEEEECCCCCEEECCCCCCCEEEEEEHHHHHHHHHHHCCCCCEEEEEHHHHCCCCEEEEE
IVVTAQGAPAPRRSGGFDRGERSGGFGGGGGYGGGGGGGFGGGSRGGGFGGDRPRGAVMG
EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
SGSGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGK
CCCCEEEECCCCCCCEEECCCCCCCEEEEEEEEHHHHCCCCCCCCCEEEECCHHHHCCCC
TSATNLKITG
CCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]