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The map label for this gene is fliR [H]

Identifier: 197104397

GI number: 197104397

Start: 1022079

End: 1022840

Strand: Direct

Name: fliR [H]

Synonym: PHZ_c0931

Alternate gene names: 197104397

Gene position: 1022079-1022840 (Clockwise)

Preceding gene: 197104396

Following gene: 197104398

Centisome position: 25.58

GC content: 69.16

Gene sequence:

>762_bases
ATGGAATCCTACGCCACAGCCCAGCAGGTCTTCGCCGCCGGCCTGGTCTTCGCCAGGCTCGGCGCGATCATCATGCTGAT
CCCGGGCCTGGGCGAGACCTTCATCCCGGCGCGAATCCGCCTGTCGTTCGCCCTGGCCCTGGCCCTGATGCTGTTCCCGG
TGCTGGGCGCCACCGCGCCACCCATCCCCGCCAGCGCCGGCGCGCTCGCGGGCGAGGTGATCCGCGAGCTGCTCATCGGC
CTGATGATCGGCGCCATCCTGCGGATCTTCATGCTGTCGCTGGCGACCGCGGGCGAAATCGTCTCGCTGGGCACGACGCT
GTCGTTCGCCCAGACCGCCAACCCGATGCAGGCCCAGCCGACGCCGACGCTCAGCACCTTCCTGGGCATGCTGGGCATCG
TGCTGATCCTGACGACCGACCTGCACCACATGTTCCTGGCCGCGCTGGTGCGCTCGTACGCCATCTTCCCCTTCGGCCGC
GAGGTGCCGGTGGGCGATGCCGGCCAGCTCGCCATCCAGACGACCAGCCGCGCGTTCGCCCTGGGGCTCCAGCTGGCCGC
GCCGGTGGTCGTCCTGTCGCTGATCGTCAACGTCGCCGTGGGCCTGGTGGGGCGGGTGATGCCCACGTTCCAGGTGTTCT
TCATCGCCTCGCCGCTGCTGGTGCTGCTGGGCCTGTCGGTCTTCGCCGTCAGCCTCGGCGTGATCGGCATGGTCTGGGTC
GACCGCTACCGTGAGCTCATAGGGATGTTCCTGGGCTCATGA

Upstream 100 bases:

>100_bases
CTGCTCATCTTCCTGCCGCTCATGGGCGCGCTGATGAGCGGCTTCATGCGCCACATCGCCGCCCGCATCGCGGCCATGTG
AGGCGGCGCGCGCCCGCCCG

Downstream 100 bases:

>100_bases
GCGAAACCGAACAGTCCTCCAAGACAGAAGAGGCCACCCCGCGGAAGCTGGAGAAGGCCCGCTCCCAGGGCGATGTCGCC
AAGACCATGGACCTGTCCTC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MESYATAQQVFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGEVIRELLIG
LMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGIVLILTTDLHHMFLAALVRSYAIFPFGR
EVPVGDAGQLAIQTTSRAFALGLQLAAPVVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWV
DRYRELIGMFLGS

Sequences:

>Translated_253_residues
MESYATAQQVFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGEVIRELLIG
LMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGIVLILTTDLHHMFLAALVRSYAIFPFGR
EVPVGDAGQLAIQTTSRAFALGLQLAAPVVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWV
DRYRELIGMFLGS
>Mature_253_residues
MESYATAQQVFAAGLVFARLGAIIMLIPGLGETFIPARIRLSFALALALMLFPVLGATAPPIPASAGALAGEVIRELLIG
LMIGAILRIFMLSLATAGEIVSLGTTLSFAQTANPMQAQPTPTLSTFLGMLGIVLILTTDLHHMFLAALVRSYAIFPFGR
EVPVGDAGQLAIQTTSRAFALGLQLAAPVVVLSLIVNVAVGLVGRVMPTFQVFFIASPLLVLLGLSVFAVSLGVIGMVWV
DRYRELIGMFLGS

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=232, Percent_Identity=31.4655172413793, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 26538; Mature: 26538

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7814323; 11259647 [H]