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The map label for this gene is yebA [H]

Identifier: 197104314

GI number: 197104314

Start: 938134

End: 939468

Strand: Reverse

Name: yebA [H]

Synonym: PHZ_c0848

Alternate gene names: 197104314

Gene position: 939468-938134 (Counterclockwise)

Preceding gene: 197104315

Following gene: 197104313

Centisome position: 23.51

GC content: 73.26

Gene sequence:

>1335_bases
ATGGCAGAATTCGACCCGCGACGTTTCTCGTTCCGGATCGCACCGCGCGTGCTTGCGGGCGGAGGGGCGCTGATCGCCCT
CTTCGCCGCCTGGAAGATGACGGACACCACCGGCGCGCCCTCCGCGCCGCCGCTGGCGCCTGAGGCGGTGGCCGCGCTCC
AGCACGCCGCCTTCACCCAGGCCGAGATCGAGCCCGGCTGGAGCCGGCCCGAGAACGTCCCGGTCAAGGTCCTCCGCGGC
GAGACCCTGGAAGAGGCCGTCCAGCGGGCCGGCGTCGCGCCCGACGAGGCCCGGCAGGCGGTCGCTGCCCTGGGCCAGGC
CATGGACACCGTCCACATCAAGGCCGGCATGGCGTTCGACGCCGCCGTCGCCCGTCCCCGCGCCGAACGCGGCCACGCCC
GGCTGATCGGCCTGTCGCTGCGCACCGGCCCGGCCAGCGCGCTGACCCTCTCGCGCACCTTCGACGGCGCGCTGCGCCTG
CGCTCGCTGGAAGAGGCGATCACCGAGGAGACCACCGTCGCCGACGGCGAGATCCGCGGCTCGCTCTACGAGAGCGCCGC
CAAGCTGGGCGCCACGCCCGAGATCGTGGCCCAGGTCTCCAAGCTGTTCGCCCACAAGATCGACTTCCAGCGCGACATCC
AGCCCGGCGACGACTTCAAGCTGGTGTTCGGGCGCAAGGTCACCGAGAGCGGCCGCACCGTGGACACCGGCGACCTCGAG
TACGCCGAGCTGCACGGCGTGAAATTCTACCGCTTCGAACGCGGTGACGGCGACGTCGAGTACTTCGACGAGACCGGCAA
GAACATCAAAGGCTTCCTGCTGCGCACGCCCGTCGACGGCGCGCGCATGACCTCGCGGTTCGGCCTGCGGCGGCACCCGG
TGCTGGGCTACGCCCGAGCCCACCAGGGCGTGGACTTCGGGGCGGGCCACGGCACGCCGATCCTGGCCGCCGGCGACGGC
GTCGTCAGCCGCGCGAGCCGCTGGGGCGGCTACGGCAACTGGCTGCAGATCAAGCACTCGGGCGGCTGGTCCACCGGCTA
CGCCCACCTCTCGCGCTACGCCAAGGGGGTCCGCCCGGGCGTGCGCGTCCGCCAGGGCCAGGTGGTCGGCTACGTCGGCT
CGACCGGCCTCTCCACCGGTCCGCACCTGCACTACGAGGTGTGGCTGAACGGCCGGCGGGTGAACCCTGTCGGCGCGAAG
GTGCCGCAGGGCACCGTGCTGGCCGGCGCCGAGCTCGCCCGCTTCAAGGCCCAGAAGGCGCGCATCCAGCGCCTGCTCGA
GGCCGGCGGTGGGGAAGCCCCGCGCGCCCTCGCCTCGCTCGACACCGCCCCCTAG

Upstream 100 bases:

>100_bases
GGGGAGCGGGCCCATCAGAGGCTCTGCAGGGCGGGGGACACTGAAAATTTGGCTTTGCGTAGCCGATCGCTTAACCAAGC
GCGGCTAGTACGGGGGCGTA

Downstream 100 bases:

>100_bases
GCCGCTGGGGCGCCCGCGGCCCGCCGCTTGCGCTAACCTGGCTCGGCGGAAGGAAGATCCCCATGCCGAGCGTCACCGAA
GCCTATTTCGAGGTCATCAA

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MAEFDPRRFSFRIAPRVLAGGGALIALFAAWKMTDTTGAPSAPPLAPEAVAALQHAAFTQAEIEPGWSRPENVPVKVLRG
ETLEEAVQRAGVAPDEARQAVAALGQAMDTVHIKAGMAFDAAVARPRAERGHARLIGLSLRTGPASALTLSRTFDGALRL
RSLEEAITEETTVADGEIRGSLYESAAKLGATPEIVAQVSKLFAHKIDFQRDIQPGDDFKLVFGRKVTESGRTVDTGDLE
YAELHGVKFYRFERGDGDVEYFDETGKNIKGFLLRTPVDGARMTSRFGLRRHPVLGYARAHQGVDFGAGHGTPILAAGDG
VVSRASRWGGYGNWLQIKHSGGWSTGYAHLSRYAKGVRPGVRVRQGQVVGYVGSTGLSTGPHLHYEVWLNGRRVNPVGAK
VPQGTVLAGAELARFKAQKARIQRLLEAGGGEAPRALASLDTAP

Sequences:

>Translated_444_residues
MAEFDPRRFSFRIAPRVLAGGGALIALFAAWKMTDTTGAPSAPPLAPEAVAALQHAAFTQAEIEPGWSRPENVPVKVLRG
ETLEEAVQRAGVAPDEARQAVAALGQAMDTVHIKAGMAFDAAVARPRAERGHARLIGLSLRTGPASALTLSRTFDGALRL
RSLEEAITEETTVADGEIRGSLYESAAKLGATPEIVAQVSKLFAHKIDFQRDIQPGDDFKLVFGRKVTESGRTVDTGDLE
YAELHGVKFYRFERGDGDVEYFDETGKNIKGFLLRTPVDGARMTSRFGLRRHPVLGYARAHQGVDFGAGHGTPILAAGDG
VVSRASRWGGYGNWLQIKHSGGWSTGYAHLSRYAKGVRPGVRVRQGQVVGYVGSTGLSTGPHLHYEVWLNGRRVNPVGAK
VPQGTVLAGAELARFKAQKARIQRLLEAGGGEAPRALASLDTAP
>Mature_443_residues
AEFDPRRFSFRIAPRVLAGGGALIALFAAWKMTDTTGAPSAPPLAPEAVAALQHAAFTQAEIEPGWSRPENVPVKVLRGE
TLEEAVQRAGVAPDEARQAVAALGQAMDTVHIKAGMAFDAAVARPRAERGHARLIGLSLRTGPASALTLSRTFDGALRLR
SLEEAITEETTVADGEIRGSLYESAAKLGATPEIVAQVSKLFAHKIDFQRDIQPGDDFKLVFGRKVTESGRTVDTGDLEY
AELHGVKFYRFERGDGDVEYFDETGKNIKGFLLRTPVDGARMTSRFGLRRHPVLGYARAHQGVDFGAGHGTPILAAGDGV
VSRASRWGGYGNWLQIKHSGGWSTGYAHLSRYAKGVRPGVRVRQGQVVGYVGSTGLSTGPHLHYEVWLNGRRVNPVGAKV
PQGTVLAGAELARFKAQKARIQRLLEAGGGEAPRALASLDTAP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=283, Percent_Identity=34.6289752650177, Blast_Score=149, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 47542; Mature: 47411

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFDPRRFSFRIAPRVLAGGGALIALFAAWKMTDTTGAPSAPPLAPEAVAALQHAAFTQ
CCCCCCCCEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEIEPGWSRPENVPVKVLRGETLEEAVQRAGVAPDEARQAVAALGQAMDTVHIKAGMAFD
CCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCHH
AAVARPRAERGHARLIGLSLRTGPASALTLSRTFDGALRLRSLEEAITEETTVADGEIRG
HHHCCCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SLYESAAKLGATPEIVAQVSKLFAHKIDFQRDIQPGDDFKLVFGRKVTESGRTVDTGDLE
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEECCCCCEECCCCCC
YAELHGVKFYRFERGDGDVEYFDETGKNIKGFLLRTPVDGARMTSRFGLRRHPVLGYARA
HHHHCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCCCEEHHHH
HQGVDFGAGHGTPILAAGDGVVSRASRWGGYGNWLQIKHSGGWSTGYAHLSRYAKGVRPG
CCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VRVRQGQVVGYVGSTGLSTGPHLHYEVWLNGRRVNPVGAKVPQGTVLAGAELARFKAQKA
CEEECCEEEEEECCCCCCCCCEEEEEEEECCEEECCCCCCCCCCCEEECHHHHHHHHHHH
RIQRLLEAGGGEAPRALASLDTAP
HHHHHHHCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
AEFDPRRFSFRIAPRVLAGGGALIALFAAWKMTDTTGAPSAPPLAPEAVAALQHAAFTQ
CCCCCCCEEEEECCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AEIEPGWSRPENVPVKVLRGETLEEAVQRAGVAPDEARQAVAALGQAMDTVHIKAGMAFD
CCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCHH
AAVARPRAERGHARLIGLSLRTGPASALTLSRTFDGALRLRSLEEAITEETTVADGEIRG
HHHCCCCCCCCCEEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
SLYESAAKLGATPEIVAQVSKLFAHKIDFQRDIQPGDDFKLVFGRKVTESGRTVDTGDLE
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEECCCCCEECCCCCC
YAELHGVKFYRFERGDGDVEYFDETGKNIKGFLLRTPVDGARMTSRFGLRRHPVLGYARA
HHHHCCEEEEEEECCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCCCEEHHHH
HQGVDFGAGHGTPILAAGDGVVSRASRWGGYGNWLQIKHSGGWSTGYAHLSRYAKGVRPG
CCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCC
VRVRQGQVVGYVGSTGLSTGPHLHYEVWLNGRRVNPVGAKVPQGTVLAGAELARFKAQKA
CEEECCEEEEEECCCCCCCCCEEEEEEEECCEEECCCCCCCCCCCEEECHHHHHHHHHHH
RIQRLLEAGGGEAPRALASLDTAP
HHHHHHHCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]