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The map label for this gene is yabB [H]

Identifier: 197104246

GI number: 197104246

Start: 860011

End: 860751

Strand: Reverse

Name: yabB [H]

Synonym: PHZ_c0780

Alternate gene names: 197104246

Gene position: 860751-860011 (Counterclockwise)

Preceding gene: 197104249

Following gene: 197104244

Centisome position: 21.54

GC content: 77.06

Gene sequence:

>741_bases
ATGCGAACCGTGACCGAGGACCGCGTGCTGGACGGGCGGGTGCGCCTGCGCCAGCCGTCACGCGGCTATCGGGCCGGGCT
GGACGCGGCCCTGCTGGCCGCCGCGTGCGACGCGGAGACGGGCCAGCGGGTGCTGGAGGCCGGCTGCGGCGCCGGCGGGG
CCCTGCTGGCGGCGGCCGTCCGGCGGCCGGGCGCCAGCTTCGTCGGGGTCGAGCGCGACCCCGAGGCCCTGGCGCTGGCG
CAGGAGAACGTCGCGCTCAACGGCCTTCAGGACCGGGTGCAGGTGCTGGCGGGCGACGTCGGCGTCCCCTTCGCCAAGCT
GGGCCTGCCGGCGTTCGACGCGGCCATGGCCAACCCGCCGTTCTTCGACAATCCCGCAGCGCTCCGGGCCCCGGCCGCGG
AGAAGACCGCCGCCTGGATGGCCGAGGGCGGGCTCTCCGCCTGGACCGGCTTCCTGTCGAAGGCGGTGCGCGAGGGCGGG
ACGATCACCATCATCCACCGCGCCGACCGCCTGGCCGACCTGCTGGCCGGGCTCTCGCCCAAGGCCGGCTCGTTCCAGGT
GCGGCCCGTCCACGCGTTCGCGGGCGAGCCGGCCAAGCGGGTGATCGTGCGGGCGGTCAAGACCGGCAAGGCGCCGCTCA
GGCTGCTGCCGGCCCTGGTGCTGCACGACCGCGGCGGGGCCAAGCACACCGCCGAGGCGGAGGCGATCCTGCGGGGGGCG
GCGGGGCTGGCGTGGGGTTGA

Upstream 100 bases:

>100_bases
CCCCGACCGGTAGCCGTTTGCCGGGACAATGGTGACGCGATAGGGCACGGTCAAGCGAGCCGCAAGCGTAGCGGACGTCT
TGCCGGCGGGACCTGATCTT

Downstream 100 bases:

>100_bases
TGTTGTTCTTGTTTTGTTCTTGACGTCGCGCCGTCCCTCTGGCATTGGCGCGTCTGGCCGATCAGCCCCGCCCTCTACGG
TCTGTCCTTCGGAGGCTTTG

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MRTVTEDRVLDGRVRLRQPSRGYRAGLDAALLAAACDAETGQRVLEAGCGAGGALLAAAVRRPGASFVGVERDPEALALA
QENVALNGLQDRVQVLAGDVGVPFAKLGLPAFDAAMANPPFFDNPAALRAPAAEKTAAWMAEGGLSAWTGFLSKAVREGG
TITIIHRADRLADLLAGLSPKAGSFQVRPVHAFAGEPAKRVIVRAVKTGKAPLRLLPALVLHDRGGAKHTAEAEAILRGA
AGLAWG

Sequences:

>Translated_246_residues
MRTVTEDRVLDGRVRLRQPSRGYRAGLDAALLAAACDAETGQRVLEAGCGAGGALLAAAVRRPGASFVGVERDPEALALA
QENVALNGLQDRVQVLAGDVGVPFAKLGLPAFDAAMANPPFFDNPAALRAPAAEKTAAWMAEGGLSAWTGFLSKAVREGG
TITIIHRADRLADLLAGLSPKAGSFQVRPVHAFAGEPAKRVIVRAVKTGKAPLRLLPALVLHDRGGAKHTAEAEAILRGA
AGLAWG
>Mature_246_residues
MRTVTEDRVLDGRVRLRQPSRGYRAGLDAALLAAACDAETGQRVLEAGCGAGGALLAAAVRRPGASFVGVERDPEALALA
QENVALNGLQDRVQVLAGDVGVPFAKLGLPAFDAAMANPPFFDNPAALRAPAAEKTAAWMAEGGLSAWTGFLSKAVREGG
TITIIHRADRLADLLAGLSPKAGSFQVRPVHAFAGEPAKRVIVRAVKTGKAPLRLLPALVLHDRGGAKHTAEAEAILRGA
AGLAWG

Specific function: Methylates The Translation Termination Release Factor Rf1 On Gln-235 And Rf2 On Gln-252. [C]

COG id: COG4123

COG function: function code R; Predicted O-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 25429; Mature: 25429

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVTEDRVLDGRVRLRQPSRGYRAGLDAALLAAACDAETGQRVLEAGCGAGGALLAAAV
CCCCCCCCCCCCCEEECCCCCCHHHCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHH
RRPGASFVGVERDPEALALAQENVALNGLQDRVQVLAGDVGVPFAKLGLPAFDAAMANPP
HCCCCCEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCC
FFDNPAALRAPAAEKTAAWMAEGGLSAWTGFLSKAVREGGTITIIHRADRLADLLAGLSP
CCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC
KAGSFQVRPVHAFAGEPAKRVIVRAVKTGKAPLRLLPALVLHDRGGAKHTAEAEAILRGA
CCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
AGLAWG
CCCCCC
>Mature Secondary Structure
MRTVTEDRVLDGRVRLRQPSRGYRAGLDAALLAAACDAETGQRVLEAGCGAGGALLAAAV
CCCCCCCCCCCCCEEECCCCCCHHHCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHH
RRPGASFVGVERDPEALALAQENVALNGLQDRVQVLAGDVGVPFAKLGLPAFDAAMANPP
HCCCCCEECCCCCCHHHHHHHHCHHHCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHCCCC
FFDNPAALRAPAAEKTAAWMAEGGLSAWTGFLSKAVREGGTITIIHRADRLADLLAGLSP
CCCCCHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC
KAGSFQVRPVHAFAGEPAKRVIVRAVKTGKAPLRLLPALVLHDRGGAKHTAEAEAILRGA
CCCCEEEEEEHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHC
AGLAWG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]