| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is secA [H]
Identifier: 197104224
GI number: 197104224
Start: 835609
End: 838362
Strand: Reverse
Name: secA [H]
Synonym: PHZ_c0758
Alternate gene names: 197104224
Gene position: 838362-835609 (Counterclockwise)
Preceding gene: 197104226
Following gene: 197104223
Centisome position: 20.98
GC content: 67.61
Gene sequence:
>2754_bases TTGAGCATCTTCCAACGGTTCTTCGGTTCCTCCAACGACCGCAAGGTCAAGGGCATGCAGGCGCGTGTCCTGAAGATCAA CGCGCTGGAGCCCAAGATCCAGGCCCTCTCGGACGCCGAGCTGCGGGGCAAGACCGACGAGTTCAGGGCCCGCCTGGCGA AGGGCGAGACCCTGGACCAGCTGCTGGACGAGGCCTTCGCCGTGGTGCGCGAGGCCGCCAAGCGCGTGCTGGGCCAGCGG CACTACGACGTGCAGCTTGTCGGCGGCATGGTCCTGCACCAGGGCGGGATCGCCGAGATGCGGACCGGCGAAGGCAAGAC GCTGGTGGCCACCGCCCCCGTCTACCTCAACGCCCTGGCGGGCAAGGGCGTCCACGTCATCACCGTCAACGACTACCTGG CCCAGCGCGACAGCGAATGGATGGGCCAGGTTTACGGCTTCCTGGGCATGACCACGGGCGTGATCGTCCACGGCCTGTCC CAGGGCCAGCGCCAGGCGGCCTACGCCAGCGACATCACCTACGGCACGAACAACGAGTTCGGCTTCGACTACCTGCGCGA CAACCTGGTCTACGACTCCCGCGAGATGGTCCAGCGCGGCCACAACTTCGCGATCGTCGACGAGGTGGACTCGATCCTGA TCGACGAGGCGCGCACGCCGCTGATCATCTCGGGTCCCACCGAGGACCGCTCGGAATTCTACAAGACCATCGACCTGCTC ATCAAAGAGCTGGTCAAGGACCCGACCACCTACGACCACGACGAGAAGCAGCGCCAGGTCATCCTCACCGAGGAAGGCTC GGAGCGGATCGAGCAGATCCTGGAGGAGGCGGGGCACCTGGCCGAGGACTCGGCGGGCCTGTACGACCCGGCGAACGTCT CGGTCGTGCACCACGTGAACCAGGCGCTGCGGGCGAACGTGCTCTACACCCGCGACAAGGACTACATCGTCCGCGCCGGC GAGGTGATCCTGATCGACGAGTTCACCGGCCGCATGATGCATGGCCGCCGCCTGTCCGAAGGCCTGCACCAGGCCATCGA GGCCAAGGAAGGCGCCGTCATCCAGCCCGAGAACCAGACCCTGGCCTCGGTGACGATCCAGAACTACTTCCGCCTCTACT CCAAGCTGTCGGGCATGACCGGCACGGCGGCCACCGAGGCCCAGGAGTTCCTCGACATCTACCGGATGGACGTGGCCGAG ATCCCGACCAACCGGCCGATCCAGCGCATCGACGACGACGACGAGGTGTACCGGACCAGCGCCGAGAAGAACCAGGCGAT CATCAAGCAGATCGAGGAGTGCTACCGCCGGGGCCAGCCGATCCTCGTGGGCACCGTCTCGATCGAGAAGTCGGAACACC TCTCCGAGCTGCTGAAGGCGCACAAGTTCGAGGTCGACGGGAAGACGCAGACCGGCATCCCGCACAGCGTGCTGAACGCC CGCTACCACGAGCAGGAGGCCCTGATCGTCGCCGACGCCGGCGTGCCGGGCGCGGTGACCATCGCCACCAACATGGCCGG CCGCGGCACCGACATCCAGCTGGGCGGCAACGTCGACATGAAGCTGGCCAAGTGGCGCGACGAGCAGCGGGCGCAGGGCG CCGAGCCGACGCCCGAGCAGGCCTTCGCCCAGCGCGCGATCATCGAGGCCGAGATCAAGGACCTGAAGGAGAAGGCCCTG GCCGCGGGCGGCCTCTACGTGCTGGGCACCGAGCGCCACGAGAGCCGGCGGATCGACAACCAGCTGCGCGGCCGGACGGG CCGCCAGGGCGACCCCGGCCACTCGAAGTTCTTCCTCTCGTGCGAGGACGACCTGCTGCGCATCTTCGCCGGCGACCGGC TGGACGCGATCATGCGGACCTTCGGCGTGCAGGAAGGCGAGGCCATCACGCACAAGTGGCTGAACAGCGCCATCGCCACC GCCCAGAAGCGCGTCGAGCAGCGGAACTACGAAATCCGCAAGAACCTGCTGAAGTACGACGACGTCGTGAACGACCAGCG CAAGGCCGTGTTCGAGCAGCGCCAGGAGTTCATGGAGGCGACCGACCTTTCGGAGGCTGTCGCCGAGTTCCGCCGCGACA CCATCGCCGACTTCGTCCAGCGCCACCTGCCGCCCAAGGCCTACGCCGAGCAGTGGGACGTGGCGGGCCTGGACGACCAC GTTCGCCGGTACCTGGGCCTGGAGCTGCCGATCGCCGAGTGGGCCGCCGAGGACGGCATCGCCAACGAGGAGATCGAGGA GCGCATCGTCCAGGCCGCCGACGCCCGGGCGGCCGAGCGCAACGCCCTGGTGGGCGACCACATGCGCAACGTCGAGAAGA GCTTCCTGCTGCAGACCATCGACATGCAGTGGCGCGAGCACCTGATGCACCTCGACCACCTGCGCAACGTGATCGGCCTG CGCGGCTACGGCCAGCGCGACCCGCTGAACGAGTTCAAGACCGAGGCCTTCTCGCTGTTCGAGAAGCTGCTGGTGGACCT GCGCCAGAACGTGACCCGCTGGCTGATGACGGTGGAGTTCCAGTTCGAGGAGCCCGCGCCGCCGCCTCCGGAGATGTTCG AGGTCCACCTCGACCCGCTGACCGGCGAGAACGAGGCCGAGCGCGGCTTCGTGCCCGACAACATCTCGCCCGAGCAGCGC CAGGCCCTTCCCGTCACCTCCTTGCCCGACGGCTGGGAGGACACCGGCCGCAACCAGCCCTGCCCCTGCGGCTCGGGCAA GAAGTTCAAGCACTGCCACGGCGCGCTGGTGTGA
Upstream 100 bases:
>100_bases GGCTGCTTAAGTCTCGCGCGCCCTCTGACGGGCCTATTTTGCCGGCGGGCGCAGGGCCCCTTCAGTCGCCGCCGACGCCT CGCACAACGGACGCCTTCCC
Downstream 100 bases:
>100_bases GGCGGCGTCCCTCCCGGCAAGGGAGGGTTGCCCGCCCCCACGGAAGGCCGTGAAACTCTCCCCGACGACTTAGGGGAGAA ACCACCATGGCCCAGGCGCT
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 917; Mature: 916
Protein sequence:
>917_residues MSIFQRFFGSSNDRKVKGMQARVLKINALEPKIQALSDAELRGKTDEFRARLAKGETLDQLLDEAFAVVREAAKRVLGQR HYDVQLVGGMVLHQGGIAEMRTGEGKTLVATAPVYLNALAGKGVHVITVNDYLAQRDSEWMGQVYGFLGMTTGVIVHGLS QGQRQAAYASDITYGTNNEFGFDYLRDNLVYDSREMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSEFYKTIDLL IKELVKDPTTYDHDEKQRQVILTEEGSERIEQILEEAGHLAEDSAGLYDPANVSVVHHVNQALRANVLYTRDKDYIVRAG EVILIDEFTGRMMHGRRLSEGLHQAIEAKEGAVIQPENQTLASVTIQNYFRLYSKLSGMTGTAATEAQEFLDIYRMDVAE IPTNRPIQRIDDDDEVYRTSAEKNQAIIKQIEECYRRGQPILVGTVSIEKSEHLSELLKAHKFEVDGKTQTGIPHSVLNA RYHEQEALIVADAGVPGAVTIATNMAGRGTDIQLGGNVDMKLAKWRDEQRAQGAEPTPEQAFAQRAIIEAEIKDLKEKAL AAGGLYVLGTERHESRRIDNQLRGRTGRQGDPGHSKFFLSCEDDLLRIFAGDRLDAIMRTFGVQEGEAITHKWLNSAIAT AQKRVEQRNYEIRKNLLKYDDVVNDQRKAVFEQRQEFMEATDLSEAVAEFRRDTIADFVQRHLPPKAYAEQWDVAGLDDH VRRYLGLELPIAEWAAEDGIANEEIEERIVQAADARAAERNALVGDHMRNVEKSFLLQTIDMQWREHLMHLDHLRNVIGL RGYGQRDPLNEFKTEAFSLFEKLLVDLRQNVTRWLMTVEFQFEEPAPPPPEMFEVHLDPLTGENEAERGFVPDNISPEQR QALPVTSLPDGWEDTGRNQPCPCGSGKKFKHCHGALV
Sequences:
>Translated_917_residues MSIFQRFFGSSNDRKVKGMQARVLKINALEPKIQALSDAELRGKTDEFRARLAKGETLDQLLDEAFAVVREAAKRVLGQR HYDVQLVGGMVLHQGGIAEMRTGEGKTLVATAPVYLNALAGKGVHVITVNDYLAQRDSEWMGQVYGFLGMTTGVIVHGLS QGQRQAAYASDITYGTNNEFGFDYLRDNLVYDSREMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSEFYKTIDLL IKELVKDPTTYDHDEKQRQVILTEEGSERIEQILEEAGHLAEDSAGLYDPANVSVVHHVNQALRANVLYTRDKDYIVRAG EVILIDEFTGRMMHGRRLSEGLHQAIEAKEGAVIQPENQTLASVTIQNYFRLYSKLSGMTGTAATEAQEFLDIYRMDVAE IPTNRPIQRIDDDDEVYRTSAEKNQAIIKQIEECYRRGQPILVGTVSIEKSEHLSELLKAHKFEVDGKTQTGIPHSVLNA RYHEQEALIVADAGVPGAVTIATNMAGRGTDIQLGGNVDMKLAKWRDEQRAQGAEPTPEQAFAQRAIIEAEIKDLKEKAL AAGGLYVLGTERHESRRIDNQLRGRTGRQGDPGHSKFFLSCEDDLLRIFAGDRLDAIMRTFGVQEGEAITHKWLNSAIAT AQKRVEQRNYEIRKNLLKYDDVVNDQRKAVFEQRQEFMEATDLSEAVAEFRRDTIADFVQRHLPPKAYAEQWDVAGLDDH VRRYLGLELPIAEWAAEDGIANEEIEERIVQAADARAAERNALVGDHMRNVEKSFLLQTIDMQWREHLMHLDHLRNVIGL RGYGQRDPLNEFKTEAFSLFEKLLVDLRQNVTRWLMTVEFQFEEPAPPPPEMFEVHLDPLTGENEAERGFVPDNISPEQR QALPVTSLPDGWEDTGRNQPCPCGSGKKFKHCHGALV >Mature_916_residues SIFQRFFGSSNDRKVKGMQARVLKINALEPKIQALSDAELRGKTDEFRARLAKGETLDQLLDEAFAVVREAAKRVLGQRH YDVQLVGGMVLHQGGIAEMRTGEGKTLVATAPVYLNALAGKGVHVITVNDYLAQRDSEWMGQVYGFLGMTTGVIVHGLSQ GQRQAAYASDITYGTNNEFGFDYLRDNLVYDSREMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSEFYKTIDLLI KELVKDPTTYDHDEKQRQVILTEEGSERIEQILEEAGHLAEDSAGLYDPANVSVVHHVNQALRANVLYTRDKDYIVRAGE VILIDEFTGRMMHGRRLSEGLHQAIEAKEGAVIQPENQTLASVTIQNYFRLYSKLSGMTGTAATEAQEFLDIYRMDVAEI PTNRPIQRIDDDDEVYRTSAEKNQAIIKQIEECYRRGQPILVGTVSIEKSEHLSELLKAHKFEVDGKTQTGIPHSVLNAR YHEQEALIVADAGVPGAVTIATNMAGRGTDIQLGGNVDMKLAKWRDEQRAQGAEPTPEQAFAQRAIIEAEIKDLKEKALA AGGLYVLGTERHESRRIDNQLRGRTGRQGDPGHSKFFLSCEDDLLRIFAGDRLDAIMRTFGVQEGEAITHKWLNSAIATA QKRVEQRNYEIRKNLLKYDDVVNDQRKAVFEQRQEFMEATDLSEAVAEFRRDTIADFVQRHLPPKAYAEQWDVAGLDDHV RRYLGLELPIAEWAAEDGIANEEIEERIVQAADARAAERNALVGDHMRNVEKSFLLQTIDMQWREHLMHLDHLRNVIGLR GYGQRDPLNEFKTEAFSLFEKLLVDLRQNVTRWLMTVEFQFEEPAPPPPEMFEVHLDPLTGENEAERGFVPDNISPEQRQ ALPVTSLPDGWEDTGRNQPCPCGSGKKFKHCHGALV
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=930, Percent_Identity=52.258064516129, Blast_Score=922, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 103350; Mature: 103219
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFQRFFGSSNDRKVKGMQARVLKINALEPKIQALSDAELRGKTDEFRARLAKGETLDQ CCHHHHHCCCCCCCEECCCEEEEEEEECCCHHHHHHCCCHHCCCCHHHHHHHHCCCHHHH LLDEAFAVVREAAKRVLGQRHYDVQLVGGMVLHQGGIAEMRTGEGKTLVATAPVYLNALA HHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCEECCCCCEEEEECHHHHHHHC GKGVHVITVNDYLAQRDSEWMGQVYGFLGMTTGVIVHGLSQGQRQAAYASDITYGTNNEF CCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC GFDYLRDNLVYDSREMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSEFYKTIDLL CHHHHHHHHCCCCHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH IKELVKDPTTYDHDEKQRQVILTEEGSERIEQILEEAGHLAEDSAGLYDPANVSVVHHVN HHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH QALRANVLYTRDKDYIVRAGEVILIDEFTGRMMHGRRLSEGLHQAIEAKEGAVIQPENQT HHHHCCEEEECCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCH LASVTIQNYFRLYSKLSGMTGTAATEAQEFLDIYRMDVAEIPTNRPIQRIDDDDEVYRTS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHH AEKNQAIIKQIEECYRRGQPILVGTVSIEKSEHLSELLKAHKFEVDGKTQTGIPHSVLNA HHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH RYHEQEALIVADAGVPGAVTIATNMAGRGTDIQLGGNVDMKLAKWRDEQRAQGAEPTPEQ HHCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHCCCHHHHCCCCCCHHH AFAQRAIIEAEIKDLKEKALAAGGLYVLGTERHESRRIDNQLRGRTGRQGDPGHSKFFLS HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEE CEDDLLRIFAGDRLDAIMRTFGVQEGEAITHKWLNSAIATAQKRVEQRNYEIRKNLLKYD CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVVNDQRKAVFEQRQEFMEATDLSEAVAEFRRDTIADFVQRHLPPKAYAEQWDVAGLDDH HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH VRRYLGLELPIAEWAAEDGIANEEIEERIVQAADARAAERNALVGDHMRNVEKSFLLQTI HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DMQWREHLMHLDHLRNVIGLRGYGQRDPLNEFKTEAFSLFEKLLVDLRQNVTRWLMTVEF HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE QFEEPAPPPPEMFEVHLDPLTGENEAERGFVPDNISPEQRQALPVTSLPDGWEDTGRNQP EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCC CPCGSGKKFKHCHGALV CCCCCCCCHHHHCCCCC >Mature Secondary Structure SIFQRFFGSSNDRKVKGMQARVLKINALEPKIQALSDAELRGKTDEFRARLAKGETLDQ CHHHHHCCCCCCCEECCCEEEEEEEECCCHHHHHHCCCHHCCCCHHHHHHHHCCCHHHH LLDEAFAVVREAAKRVLGQRHYDVQLVGGMVLHQGGIAEMRTGEGKTLVATAPVYLNALA HHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCEECCCCCEEEEECHHHHHHHC GKGVHVITVNDYLAQRDSEWMGQVYGFLGMTTGVIVHGLSQGQRQAAYASDITYGTNNEF CCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCC GFDYLRDNLVYDSREMVQRGHNFAIVDEVDSILIDEARTPLIISGPTEDRSEFYKTIDLL CHHHHHHHHCCCCHHHHHCCCCEEEHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH IKELVKDPTTYDHDEKQRQVILTEEGSERIEQILEEAGHLAEDSAGLYDPANVSVVHHVN HHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH QALRANVLYTRDKDYIVRAGEVILIDEFTGRMMHGRRLSEGLHQAIEAKEGAVIQPENQT HHHHCCEEEECCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCH LASVTIQNYFRLYSKLSGMTGTAATEAQEFLDIYRMDVAEIPTNRPIQRIDDDDEVYRTS HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHH AEKNQAIIKQIEECYRRGQPILVGTVSIEKSEHLSELLKAHKFEVDGKTQTGIPHSVLNA HHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH RYHEQEALIVADAGVPGAVTIATNMAGRGTDIQLGGNVDMKLAKWRDEQRAQGAEPTPEQ HHCCCCEEEEECCCCCCEEEEEECCCCCCCEEEECCCCCCHHHHCCCHHHHCCCCCCHHH AFAQRAIIEAEIKDLKEKALAAGGLYVLGTERHESRRIDNQLRGRTGRQGDPGHSKFFLS HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEE CEDDLLRIFAGDRLDAIMRTFGVQEGEAITHKWLNSAIATAQKRVEQRNYEIRKNLLKYD CHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVVNDQRKAVFEQRQEFMEATDLSEAVAEFRRDTIADFVQRHLPPKAYAEQWDVAGLDDH HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH VRRYLGLELPIAEWAAEDGIANEEIEERIVQAADARAAERNALVGDHMRNVEKSFLLQTI HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH DMQWREHLMHLDHLRNVIGLRGYGQRDPLNEFKTEAFSLFEKLLVDLRQNVTRWLMTVEF HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE QFEEPAPPPPEMFEVHLDPLTGENEAERGFVPDNISPEQRQALPVTSLPDGWEDTGRNQP EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCC CPCGSGKKFKHCHGALV CCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8051008 [H]