| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is cobT [H]
Identifier: 197104190
GI number: 197104190
Start: 794646
End: 796595
Strand: Reverse
Name: cobT [H]
Synonym: PHZ_c0724
Alternate gene names: 197104190
Gene position: 796595-794646 (Counterclockwise)
Preceding gene: 197104192
Following gene: 197104189
Centisome position: 19.93
GC content: 71.69
Gene sequence:
>1950_bases ATGGCGAAGAACCCGGAAAGCCCCCTCGAGCCCTTCAAGCGTGCGCTGGCGCACGCCGCCCGCTCGCTGGCCGAGACCCC GGACCTGGAGATCGTCTATTCGGGCGAGGGCCCGCAGCTGTCGGGCAACCGGGCCGTCCTGCCGCATCCGCCGCGGGACC TGACGCCCCAGGACGCCGCCCGCATCCGCGGCCTGGCCGACCAGATGGCCCTGAAGATCGCCCACCACGACGCCGCCACC CACGCCCGGTCGCGGCCGCAGTCGGCCCAGGGCCAGCCGATCTACGACAGCCTGGAGCAGGCGCGCATCGAGGCGATCGG CGCCAACGCCATGGGCGGGGTGCGCGAGAACCTGAAGGCCGTGATGGACCAGGCCTGGTCGCGCCGGCTGTTCAACGAGG CCGAGGCGGTGGCCAATCCGCCGCTCGCCGAGGTGGTGGCCCTGATGGCGCGCGAGCGCCTGACCGGCGAGCCGCCGCCG CCAACGGCCAAGCCGCTGGTCGACCTGTTCCGCGCCGACATCGAGGCCAAGGCCGGGGCCGACCTCGACAAGCTGACCGG GGCGCTGGACGACCAGAACGCGTTCGCCCGCATCGCCCGCACCATCATCCGCGACCTCTCCATGGGCGAGGACCTGTCGG ACGCGCCCGAGCAGGACCAGCAGGAGGAGGAAGGCGAGGAGGAGGGCGAGGCCCAGCCCTCCGAGGACCAGGACGAGGGC GAAGGCGAGAGCCAGTCGCCGCAGCAGACCGCGATGGACGAGGACGAGTCCACGCACCGCGAGGCCGACGACGCCGACAG CCAGCTGATGGAGGCCGAGGAGGACCCCAACGCCGAGGACGCCGAGGAGCCGCCCGAGATGGGCGAAGGCGACCAGCCGG CGCGTCCCGACGCCTCGGGCGACGCCCGGGCCGTCACCTACAAGGTCTTCACCACCGCCCACGACGAGATCGTCGCCGCC GAGGAGCTGTGCGACGCCGAGGAGCTGACCCGGCTGCGGGCCTACCTCGACCAGCAGCTCGCCTCTGTCTCCAACGTGGT CTCGCGCCTGGCGAACCGCCTGCAGCGCAAGCTGCTGGCCCAGCAGAACCGCTCCTGGACCTTCGACCTGGAGGAAGGGG TCCTCGACGTCGCGCGGCTGACGCGGGTGATCATCGACCCCACCGCGCCGCTCTCCTTCAAGCAGGAGGAGGACACCGAG TTCCGCGACACGGTGGTCACCATCCTGATCGACAATTCCGGCTCGATGCGCGGGCGGCCGATCATGGTGGCGGCGGTCTG CGCCGACATCCTGGCCCGCACGCTGGAGCGCTGCGGCGTGAAGACCGAGATCCTCGGCTTCACCACACGGGCCTGGAAGG GCGGCTCCAGCCGCGAGGACTGGCTGAAGGCCGGCAAGCCGCCGCAGCCCGGCCGGCTGAACGACCTCCGTCACATCATC TACAAGGCCGCCGACGCGCCATGGCGGCGCGCCCGCCGCAACCTCGGCCTGATGATGCGCGAGGGGCTGCTGAAGGAGAA CATCGACGGCGAGGCCCTGATGTGGGCGCACCAGCGCCTGATCGGCCGGCCCGAGCAGCGGCGCATCCTGGTGGTGATCT CGGACGGCGCGCCGGTGGACGATTCCACCCTGTCGGTGAACTCGGGCCACTACCTCGAGCGGCACCTGCGCGAGGTGATC ACCGAGATCGAGACCAAGAGCCCGGTGCAGCTCATCGCCATCGGCATCGGCCACGACGTGACCCGCTACTACCGCCGCGC CGTCACCATCGTGGACGTCGAGCAGCTGGCCGGCGCCATGGTCGAGCAGCTCGCCGAGCTGTTCGAGGAGGAGCCCCGGC TGATGACCCGCAAGACCGCGGGCCTGCTGCAGCCGCCGCCGAACACCCAGGGCCCGCAGGGGCCGCAGCGCCGGTCCACG TTCAAGGAAGTGCGGAGGGCCACCGCTTGA
Upstream 100 bases:
>100_bases ACATCAACCCGGCTTGGCCGTGAGGGTTCCAGTTTCCCCGGCCCCTCGCACGCCACTTCCTTGTTTCCCGTCGGGTCAGC CCTGATCTAAGACGGACGCG
Downstream 100 bases:
>100_bases GGCGCGCCCTGGGGGCGGGCCTCGCTCTCCTCCTGGCGGCCTGCGTTCCCGCCGCGCCGCCGCGCCTGCCGCCGGCGCCG GTCCCCGTGGGCGCGGCCAT
Product: cobalamin biosynthesis protein
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobT [H]
Number of amino acids: Translated: 649; Mature: 648
Protein sequence:
>649_residues MAKNPESPLEPFKRALAHAARSLAETPDLEIVYSGEGPQLSGNRAVLPHPPRDLTPQDAARIRGLADQMALKIAHHDAAT HARSRPQSAQGQPIYDSLEQARIEAIGANAMGGVRENLKAVMDQAWSRRLFNEAEAVANPPLAEVVALMARERLTGEPPP PTAKPLVDLFRADIEAKAGADLDKLTGALDDQNAFARIARTIIRDLSMGEDLSDAPEQDQQEEEGEEEGEAQPSEDQDEG EGESQSPQQTAMDEDESTHREADDADSQLMEAEEDPNAEDAEEPPEMGEGDQPARPDASGDARAVTYKVFTTAHDEIVAA EELCDAEELTRLRAYLDQQLASVSNVVSRLANRLQRKLLAQQNRSWTFDLEEGVLDVARLTRVIIDPTAPLSFKQEEDTE FRDTVVTILIDNSGSMRGRPIMVAAVCADILARTLERCGVKTEILGFTTRAWKGGSSREDWLKAGKPPQPGRLNDLRHII YKAADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRRILVVISDGAPVDDSTLSVNSGHYLERHLREVI TEIETKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAMVEQLAELFEEEPRLMTRKTAGLLQPPPNTQGPQGPQRRST FKEVRRATA
Sequences:
>Translated_649_residues MAKNPESPLEPFKRALAHAARSLAETPDLEIVYSGEGPQLSGNRAVLPHPPRDLTPQDAARIRGLADQMALKIAHHDAAT HARSRPQSAQGQPIYDSLEQARIEAIGANAMGGVRENLKAVMDQAWSRRLFNEAEAVANPPLAEVVALMARERLTGEPPP PTAKPLVDLFRADIEAKAGADLDKLTGALDDQNAFARIARTIIRDLSMGEDLSDAPEQDQQEEEGEEEGEAQPSEDQDEG EGESQSPQQTAMDEDESTHREADDADSQLMEAEEDPNAEDAEEPPEMGEGDQPARPDASGDARAVTYKVFTTAHDEIVAA EELCDAEELTRLRAYLDQQLASVSNVVSRLANRLQRKLLAQQNRSWTFDLEEGVLDVARLTRVIIDPTAPLSFKQEEDTE FRDTVVTILIDNSGSMRGRPIMVAAVCADILARTLERCGVKTEILGFTTRAWKGGSSREDWLKAGKPPQPGRLNDLRHII YKAADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRRILVVISDGAPVDDSTLSVNSGHYLERHLREVI TEIETKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAMVEQLAELFEEEPRLMTRKTAGLLQPPPNTQGPQGPQRRST FKEVRRATA >Mature_648_residues AKNPESPLEPFKRALAHAARSLAETPDLEIVYSGEGPQLSGNRAVLPHPPRDLTPQDAARIRGLADQMALKIAHHDAATH ARSRPQSAQGQPIYDSLEQARIEAIGANAMGGVRENLKAVMDQAWSRRLFNEAEAVANPPLAEVVALMARERLTGEPPPP TAKPLVDLFRADIEAKAGADLDKLTGALDDQNAFARIARTIIRDLSMGEDLSDAPEQDQQEEEGEEEGEAQPSEDQDEGE GESQSPQQTAMDEDESTHREADDADSQLMEAEEDPNAEDAEEPPEMGEGDQPARPDASGDARAVTYKVFTTAHDEIVAAE ELCDAEELTRLRAYLDQQLASVSNVVSRLANRLQRKLLAQQNRSWTFDLEEGVLDVARLTRVIIDPTAPLSFKQEEDTEF RDTVVTILIDNSGSMRGRPIMVAAVCADILARTLERCGVKTEILGFTTRAWKGGSSREDWLKAGKPPQPGRLNDLRHIIY KAADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRRILVVISDGAPVDDSTLSVNSGHYLERHLREVIT EIETKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAMVEQLAELFEEEPRLMTRKTAGLLQPPPNTQGPQGPQRRSTF KEVRRATA
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG4547
COG function: function code H; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006538 - InterPro: IPR002035 [H]
Pfam domain/function: PF06213 CobT [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 71717; Mature: 71586
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNPESPLEPFKRALAHAARSLAETPDLEIVYSGEGPQLSGNRAVLPHPPRDLTPQDAA CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH RIRGLADQMALKIAHHDAATHARSRPQSAQGQPIYDSLEQARIEAIGANAMGGVRENLKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH VMDQAWSRRLFNEAEAVANPPLAEVVALMARERLTGEPPPPTAKPLVDLFRADIEAKAGA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC DLDKLTGALDDQNAFARIARTIIRDLSMGEDLSDAPEQDQQEEEGEEEGEAQPSEDQDEG CHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCC EGESQSPQQTAMDEDESTHREADDADSQLMEAEEDPNAEDAEEPPEMGEGDQPARPDASG CCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DARAVTYKVFTTAHDEIVAAEELCDAEELTRLRAYLDQQLASVSNVVSRLANRLQRKLLA CCEEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQNRSWTFDLEEGVLDVARLTRVIIDPTAPLSFKQEEDTEFRDTVVTILIDNSGSMRGRP HCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCEEEEEEECCCCCCCCCC IMVAAVCADILARTLERCGVKTEILGFTTRAWKGGSSREDWLKAGKPPQPGRLNDLRHII HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH YKAADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRRILVVISDGAPVD HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC DSTLSVNSGHYLERHLREVITEIETKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAM CCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHEEEHHHHHHHH VEQLAELFEEEPRLMTRKTAGLLQPPPNTQGPQGPQRRSTFKEVRRATA HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure AKNPESPLEPFKRALAHAARSLAETPDLEIVYSGEGPQLSGNRAVLPHPPRDLTPQDAA CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH RIRGLADQMALKIAHHDAATHARSRPQSAQGQPIYDSLEQARIEAIGANAMGGVRENLKA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH VMDQAWSRRLFNEAEAVANPPLAEVVALMARERLTGEPPPPTAKPLVDLFRADIEAKAGA HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC DLDKLTGALDDQNAFARIARTIIRDLSMGEDLSDAPEQDQQEEEGEEEGEAQPSEDQDEG CHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCC EGESQSPQQTAMDEDESTHREADDADSQLMEAEEDPNAEDAEEPPEMGEGDQPARPDASG CCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DARAVTYKVFTTAHDEIVAAEELCDAEELTRLRAYLDQQLASVSNVVSRLANRLQRKLLA CCEEEEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQNRSWTFDLEEGVLDVARLTRVIIDPTAPLSFKQEEDTEFRDTVVTILIDNSGSMRGRP HCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCEEEEEEECCCCCCCCCC IMVAAVCADILARTLERCGVKTEILGFTTRAWKGGSSREDWLKAGKPPQPGRLNDLRHII HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH YKAADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPEQRRILVVISDGAPVD HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC DSTLSVNSGHYLERHLREVITEIETKSPVQLIAIGIGHDVTRYYRRAVTIVDVEQLAGAM CCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHEEEHHHHHHHH VEQLAELFEEEPRLMTRKTAGLLQPPPNTQGPQGPQRRSTFKEVRRATA HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]