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The map label for this gene is ydeB [H]

Identifier: 197104173

GI number: 197104173

Start: 775170

End: 775685

Strand: Reverse

Name: ydeB [H]

Synonym: PHZ_c0707

Alternate gene names: 197104173

Gene position: 775685-775170 (Counterclockwise)

Preceding gene: 197104174

Following gene: 197104172

Centisome position: 19.41

GC content: 67.64

Gene sequence:

>516_bases
ATGAGCAAGAACGGTCACGATTTCTCGGTTGGCGATCACGTCGTCTACCCGGCCCACGGCGTGGGCCAGGTGCAGGGGAT
CGAAACCCAGGAAGTCGCCGGTCTGAAGCTTGAGGTCTACGTCATCACCTTCGACCACGAGAAGATGACGCTGCGCGTGC
CGACCGCCAAGGCGAAGACCGCGGGCCTGCGCCCGCTGGCCGACACGGGCCTGGTGTCCAAGGCCCTCACCACCCTGAAG
GGCCGCGCCCGGGTGAAGCGCACCATGTGGTCGCGCCGCGCCCAGGAGTACGAGGCCAAGATCAACTCGGGCGACCTGAT
CTCGATCGCCGAAGTGGTGCGCGACCTGCACCGCGCCGAGAACCAGCCCGAGCAGTCCTACTCCGAGCGCCAGCTCTACG
AGAGCGCCCTCGACCGGATGGCCCGGGAAGTCGCCGCCATCGAGCGGATCGACCGCGAAGCCGCCATCGCCATGCTGAAC
AAGTCGCTGGTGAAGGCCACCGCCGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
CGCCGCGGCCCTTTCGCGGACAGGGTGGTTTTTCGCTCGGCGGTCGCCTGCGTCGGTGATCCGGCTTCACGCCCCGGACA
GTTTTTGAGAGGATTTCTCG

Downstream 100 bases:

>100_bases
GCCGAGCCTGGCGAACCGACCCGAGACGCCCGGCCCCAGCGCCGGGCGTTTTCGTCTGTACGGAACGTCGCGGCGCGGCG
GCGGTTTTCCTGGCGGGACG

Product: transcriptional regulator,CarD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKTAGLRPLADTGLVSKALTTLK
GRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLN
KSLVKATAAAA

Sequences:

>Translated_171_residues
MSKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKTAGLRPLADTGLVSKALTTLK
GRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLN
KSLVKATAAAA
>Mature_170_residues
SKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKTAGLRPLADTGLVSKALTTLKG
RARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAENQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLNK
SLVKATAAAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 18858; Mature: 18727

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKT
CCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCEEEEEEEEEECCCEEEEECCCCCCHH
AGLRPLADTGLVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
NQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLNKSLVKATAAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKNGHDFSVGDHVVYPAHGVGQVQGIETQEVAGLKLEVYVITFDHEKMTLRVPTAKAKT
CCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCEEEEEEEEEECCCEEEEECCCCCCHH
AGLRPLADTGLVSKALTTLKGRARVKRTMWSRRAQEYEAKINSGDLISIAEVVRDLHRAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
NQPEQSYSERQLYESALDRMAREVAAIERIDREAAIAMLNKSLVKATAAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]